RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 NBPF3Q9H094 633 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 COG6Q9Y2V7 657 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 IRX3P78415 501 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 OGFRQ9NZT2 677 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 HMG20BQ9P0W2 317 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 TRIM37O94972 964 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 SFPQP23246 707 aaKnown RBP eCLIP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 RNF14Q9UBS8 474 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 CDC45O75419 566 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 GNAI3P08754 354 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 DDX46Q7L014 1031 aaKnown RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 DRC1Q96MC2 740 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 FMNL2Q96PY5 1086 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 LRRC27Q9C0I9 530 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 KIF4BQ2VIQ3 1234 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 BACH2Q9BYV9 841 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 SRRM3A6NNA2 597 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 FCHSD1Q86WN1 690 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 NPM1P06748 294 aaKnown RBP eCLIP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 CKAP4Q07065 602 aaKnown RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 NONOQ15233 471 aaKnown RBP eCLIP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 GFAPP14136 432 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 TAF7Q15545 349 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 RSRC1Q96IZ7 334 aaKnown RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 DNAJC25Q9H1X3 360 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 CLEC17AQ6ZS10 378 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 RNF168Q8IYW5 571 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 SMTNL1A8MU46 457 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 PRPF6O94906 941 aaKnown RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 PPP1R12CQ9BZL4 782 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 NOL7Q9UMY1 257 aaKnown RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 CFDP1Q9UEE9 299 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-207ENST00000367255 KCNG1Q9UIX4 513 aa4.36□□□□□ -1.71
SYNE1-207ENST00000367255 LIMCH1Q9UPQ0 1083 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 DDX49Q9Y6V7 483 aaKnown RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 MAP4K4O95819 1239 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 SEPT6Q14141 434 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 ARHGAP24Q8N264 748 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 SIL1Q9H173 461 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC160A6NGH7 325 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 ANXA13P27216 316 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 RUFY3Q7L099 469 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 ARHGAP18Q8N392 663 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 RNASELQ05823 741 aaKnown RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 BRAPQ7Z569 592 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 SMC1AQ14683 1233 aaKnown RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 HNRNPMP52272 730 aaKnown RBP eCLIP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 SCLT1Q96NL6 688 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 GRPEL1Q9HAV7 217 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 SART3Q15020 963 aaKnown RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 RIOK3O14730 519 aaKnown RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 DESP17661 470 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 KIAA0753Q2KHM9 967 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 NOC3LQ8WTT2 800 aaKnown RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 WASF1Q92558 559 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 SSH2Q76I76 1423 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 CLCN2P51788 898 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 SPECC1Q5M775 1068 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 FEZ2Q9UHY8 353 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 EIF2S2P20042 333 aaKnown RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 CEP135Q66GS9 1140 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 ZNF397Q8NF99 534 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 HDAC1Q13547 482 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 MYCBPQ99417 103 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 RTL1A6NKG5 1358 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 BMP2KLQ5H9B9 411 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 RUNDC3BQ96NL0 473 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 RAB15P59190 212 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 SF3A3Q12874 501 aaKnown RBP eCLIP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 ZNF713Q8N859 430 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 SMC1BQ8NDV3 1235 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 RNF123Q5XPI4 1314 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 ATP5DP30049 168 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 TSGA10Q9BZW7 698 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 LARSQ9P2J5 1176 aaKnown RBP4.35□□□□□ -1.71
SYNE1-207ENST00000367255 CARMIL3Q8ND23 1372 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 NBPF20Q3BBV1 942 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 UBXN4Q92575 508 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 PPFIA1Q13136 1202 aa4.35□□□□□ -1.71
SYNE1-207ENST00000367255 SBNO2Q9Y2G9 1366 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.34□□□□□ -1.71
SYNE1-207ENST00000367255 TSPY26PQ9H489 355 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 PPP1R14BQ96C90 147 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 FGD1P98174 961 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 CCDC110Q8TBZ0 833 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 DKK3Q9UBP4 350 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 STIM1Q13586 685 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 MCTP1Q6DN14 999 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 IMPACTQ9P2X3 320 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 H0YHG0 523 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 DUSP27Q5VZP5 1158 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 PHACTR1Q9C0D0 580 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 VCXQ9H320 206 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 PNISRQ8TF01 805 aaKnown RBP4.34□□□□□ -1.71
SYNE1-207ENST00000367255 KIF2CQ99661 725 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 CNPY3Q9BT09 278 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 FAF1Q9UNN5 650 aaPredicted RBP4.34□□□□□ -1.71
SYNE1-207ENST00000367255 MACROD2A1Z1Q3 448 aa4.34□□□□□ -1.71
SYNE1-207ENST00000367255 SCP2P22307 547 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms