RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 STIM1Q13586 685 aa21.86■■□□□ 1.09
CLIP2-202ENST00000361545 PTPRKQ15262 1439 aa21.86■■□□□ 1.09
CLIP2-202ENST00000361545 FERMT3Q86UX7 667 aa21.85■■□□□ 1.09
CLIP2-202ENST00000361545 CCDC83Q8IWF9 413 aa21.85■■□□□ 1.09
CLIP2-202ENST00000361545 ANKRD13DQ6ZTN6 518 aa21.85■■□□□ 1.09
CLIP2-202ENST00000361545 CAGE1Q8TC20 777 aa21.85■■□□□ 1.09
CLIP2-202ENST00000361545 ATP6V1AP38606 617 aa21.85■■□□□ 1.09
CLIP2-202ENST00000361545 NBPF6Q5VWK0 638 aa21.85■■□□□ 1.09
CLIP2-202ENST00000361545 NBPF5PQ86XG9 351 aaPredicted RBP21.85■■□□□ 1.09
CLIP2-202ENST00000361545 SMARCE1Q969G3 411 aa21.85■■□□□ 1.09
CLIP2-202ENST00000361545 NBPF4Q96M43 638 aa21.85■■□□□ 1.09
CLIP2-202ENST00000361545 TTLL12Q14166 644 aaPredicted RBP21.84■■□□□ 1.09
CLIP2-202ENST00000361545 ZNF444Q8N0Y2 327 aaPredicted RBP21.84■■□□□ 1.09
CLIP2-202ENST00000361545 PDCL3Q9H2J4 239 aa21.84■■□□□ 1.09
CLIP2-202ENST00000361545 SEC63Q9UGP8 760 aaKnown RBP21.84■■□□□ 1.09
CLIP2-202ENST00000361545 GOLIM4O00461 696 aa21.84■■□□□ 1.09
CLIP2-202ENST00000361545 SPC24Q8NBT2 197 aa21.84■■□□□ 1.09
CLIP2-202ENST00000361545 CCDC39Q9UFE4 941 aa21.84■■□□□ 1.09
CLIP2-202ENST00000361545 BMP2KQ9NSY1 1161 aaPredicted RBP21.84■■□□□ 1.09
CLIP2-202ENST00000361545 CHPF2Q9P2E5 772 aa21.84■■□□□ 1.09
CLIP2-202ENST00000361545 CFAP45Q9UL16 551 aa21.83■■□□□ 1.09
CLIP2-202ENST00000361545 PIK3R4Q99570 1358 aa21.83■■□□□ 1.09
CLIP2-202ENST00000361545 CCDC192P0DO97 292 aa21.83■■□□□ 1.09
CLIP2-202ENST00000361545 DDB1Q16531 1140 aa21.83■■□□□ 1.08
CLIP2-202ENST00000361545 C19orf44Q9H6X5 657 aa21.83■■□□□ 1.08
CLIP2-202ENST00000361545 ZNF213O14771 459 aa21.83■■□□□ 1.08
CLIP2-202ENST00000361545 IBSPP21815 317 aaPredicted RBP21.83■■□□□ 1.08
CLIP2-202ENST00000361545 FAM43AQ8N2R8 423 aa21.82■■□□□ 1.08
CLIP2-202ENST00000361545 CCDC96Q2M329 555 aa21.82■■□□□ 1.08
CLIP2-202ENST00000361545 CCDC173Q0VFZ6 552 aa21.81■■□□□ 1.08
CLIP2-202ENST00000361545 UGGT2Q9NYU1 1516 aa21.81■■□□□ 1.08
CLIP2-202ENST00000361545 PAF1Q8N7H5 531 aa21.81■■□□□ 1.08
CLIP2-202ENST00000361545 XAGE3Q8WTP9 111 aa21.81■■□□□ 1.08
CLIP2-202ENST00000361545 RUFY1Q96T51 708 aa21.81■■□□□ 1.08
CLIP2-202ENST00000361545 KCNA6P17658 529 aa21.81■■□□□ 1.08
CLIP2-202ENST00000361545 CTCFLQ8NI51 663 aaPredicted RBP21.81■■□□□ 1.08
CLIP2-202ENST00000361545 EIF4A2Q14240 407 aaKnown RBP21.8■■□□□ 1.08
CLIP2-202ENST00000361545 SLC4A8Q2Y0W8 1093 aa21.8■■□□□ 1.08
CLIP2-202ENST00000361545 TSHZ3Q63HK5 1081 aa21.8■■□□□ 1.08
CLIP2-202ENST00000361545 IQCA1Q86XH1 822 aa21.8■■□□□ 1.08
CLIP2-202ENST00000361545 ECHDC1Q9NTX5 307 aa21.8■■□□□ 1.08
CLIP2-202ENST00000361545 WDR78Q5VTH9 848 aa21.8■■□□□ 1.08
CLIP2-202ENST00000361545 COPS6Q7L5N1 327 aa21.8■■□□□ 1.08
CLIP2-202ENST00000361545 DACH1Q9UI36 760 aa21.8■■□□□ 1.08
CLIP2-202ENST00000361545 CHMP4BP1P59074 171 aa21.8■■□□□ 1.08
CLIP2-202ENST00000361545 MPNDQ8N594 471 aa21.8■■□□□ 1.08
CLIP2-202ENST00000361545 SLF2Q8IX21 1173 aa21.79■■□□□ 1.08
CLIP2-202ENST00000361545 ZNHIT6Q9NWK9 470 aaKnown RBP21.79■■□□□ 1.08
CLIP2-202ENST00000361545 PAXIP1Q6ZW49 1069 aaPredicted RBP21.79■■□□□ 1.08
CLIP2-202ENST00000361545 ZMYM3Q14202 1370 aa21.78■■□□□ 1.08
CLIP2-202ENST00000361545 ST5P78524 1137 aa21.78■■□□□ 1.08
CLIP2-202ENST00000361545 GUCY1B3Q02153 619 aa21.77■■□□□ 1.08
CLIP2-202ENST00000361545 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.77■■□□□ 1.08
CLIP2-202ENST00000361545 SLC12A7Q9Y666 1083 aa21.77■■□□□ 1.08
CLIP2-202ENST00000361545 MATR3P43243 847 aaKnown RBP eCLIP21.77■■□□□ 1.08
CLIP2-202ENST00000361545 CEP57L1Q8IYX8 460 aa21.77■■□□□ 1.08
CLIP2-202ENST00000361545 IFIT3O14879 490 aaKnown RBP21.77■■□□□ 1.08
CLIP2-202ENST00000361545 LARP6Q9BRS8 491 aaKnown RBP21.77■■□□□ 1.08
CLIP2-202ENST00000361545 ABCC10Q5T3U5 1492 aa21.77■■□□□ 1.07
CLIP2-202ENST00000361545 AKAP4Q5JQC9 854 aa21.76■■□□□ 1.07
CLIP2-202ENST00000361545 PPFIBP1Q86W92 1011 aa21.76■■□□□ 1.07
CLIP2-202ENST00000361545 SETDB2Q96T68 719 aa21.76■■□□□ 1.07
CLIP2-202ENST00000361545 IL2RBP14784 551 aa21.76■■□□□ 1.07
CLIP2-202ENST00000361545 EVI5LQ96CN4 794 aa21.76■■□□□ 1.07
CLIP2-202ENST00000361545 CCDC196A0A1B0GTZ2 297 aa21.76■■□□□ 1.07
CLIP2-202ENST00000361545 POLKQ9UBT6 870 aa21.76■■□□□ 1.07
CLIP2-202ENST00000361545 CCDC152Q4G0S7 254 aa21.76■■□□□ 1.07
CLIP2-202ENST00000361545 DEF6Q9H4E7 631 aa21.75■■□□□ 1.07
CLIP2-202ENST00000361545 RNF41Q9H4P4 317 aaPredicted RBP21.75■■□□□ 1.07
CLIP2-202ENST00000361545 DHX8Q14562 1220 aaKnown RBP21.75■■□□□ 1.07
CLIP2-202ENST00000361545 NFATC2IPQ8NCF5 419 aa21.75■■□□□ 1.07
CLIP2-202ENST00000361545 HAND2P61296 217 aa21.75■■□□□ 1.07
CLIP2-202ENST00000361545 NUP62CLQ9H1M0 184 aa21.75■■□□□ 1.07
CLIP2-202ENST00000361545 ITSN2Q9NZM3 1697 aa21.75■■□□□ 1.07
CLIP2-202ENST00000361545 IL16Q14005 1332 aa21.74■■□□□ 1.07
CLIP2-202ENST00000361545 MTHFSDQ2M296 383 aaKnown RBP21.74■■□□□ 1.07
CLIP2-202ENST00000361545 ARGLU1Q9NWB6 273 aaPredicted RBP21.74■■□□□ 1.07
CLIP2-202ENST00000361545 GCP02774 474 aa21.74■■□□□ 1.07
CLIP2-202ENST00000361545 IQSEC3Q9UPP2 1182 aaPredicted RBP21.74■■□□□ 1.07
CLIP2-202ENST00000361545 PATL2C9JE40 543 aaKnown RBP21.74■■□□□ 1.07
CLIP2-202ENST00000361545 TTF1Q15361 905 aaPredicted RBP21.74■■□□□ 1.07
CLIP2-202ENST00000361545 WWC3Q9ULE0 1092 aa21.74■■□□□ 1.07
CLIP2-202ENST00000361545 CCT2P78371 535 aaKnown RBP21.73■■□□□ 1.07
CLIP2-202ENST00000361545 CEP131Q9UPN4 1083 aa21.73■■□□□ 1.07
CLIP2-202ENST00000361545 LDHCP07864 332 aa21.73■■□□□ 1.07
CLIP2-202ENST00000361545 C8orf76Q96K31 380 aa21.73■■□□□ 1.07
CLIP2-202ENST00000361545 MEIS3Q99687 375 aa21.73■■□□□ 1.07
CLIP2-202ENST00000361545 NIP7Q9Y221 180 aaKnown RBP eCLIP21.73■■□□□ 1.07
CLIP2-202ENST00000361545 KIAA0556O60303 1618 aa21.73■■□□□ 1.07
CLIP2-202ENST00000361545 GOLGA8BA8MQT2 603 aa21.72■■□□□ 1.07
CLIP2-202ENST00000361545 HMGB1P09429 215 aaKnown RBP21.72■■□□□ 1.07
CLIP2-202ENST00000361545 C8orf58Q8NAV2 365 aa21.72■■□□□ 1.07
CLIP2-202ENST00000361545 FEZ1Q99689 392 aa21.72■■□□□ 1.07
CLIP2-202ENST00000361545 GOLGA8AA7E2F4 631 aa21.72■■□□□ 1.07
CLIP2-202ENST00000361545 PRAG1Q86YV5 1406 aa21.72■■□□□ 1.07
CLIP2-202ENST00000361545 SMARCC1Q92922 1105 aaPredicted RBP21.72■■□□□ 1.07
CLIP2-202ENST00000361545 WDHD1O75717 1129 aaPredicted RBP21.71■■□□□ 1.07
CLIP2-202ENST00000361545 BAG3O95817 575 aa21.71■■□□□ 1.07
CLIP2-202ENST00000361545 ANKRD18AQ8IVF6 992 aa21.71■■□□□ 1.07
CLIP2-202ENST00000361545 NOM1Q5C9Z4 860 aaKnown RBP21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms