RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 C3P01024 1663 aa14.66□□□□□ -0.06
CLIP3-201ENST00000360535 PEAK1Q9H792 1746 aa14.66□□□□□ -0.06
CLIP3-201ENST00000360535 TCHHQ07283 1943 aa14.66□□□□□ -0.06
CLIP3-201ENST00000360535 TRHP20396 242 aaPredicted RBP14.65□□□□□ -0.06
CLIP3-201ENST00000360535 KCNJ4P48050 445 aa14.65□□□□□ -0.06
CLIP3-201ENST00000360535 SETD1AO15047 1707 aaKnown RBP14.65□□□□□ -0.06
CLIP3-201ENST00000360535 PA2G4Q9UQ80 394 aaKnown RBP14.65□□□□□ -0.06
CLIP3-201ENST00000360535 SBNO1A3KN83 1393 aa14.65□□□□□ -0.06
CLIP3-201ENST00000360535 ARHGEF10O15013 1369 aa14.65□□□□□ -0.06
CLIP3-201ENST00000360535 SPATA31D1Q6ZQQ2 1576 aa14.65□□□□□ -0.06
CLIP3-201ENST00000360535 CASTP20810 708 aaKnown RBP14.65□□□□□ -0.06
CLIP3-201ENST00000360535 MPRIPQ6WCQ1 1025 aa14.65□□□□□ -0.06
CLIP3-201ENST00000360535 SIRT1Q96EB6 747 aa14.65□□□□□ -0.06
CLIP3-201ENST00000360535 IGSF1Q8N6C5 1336 aa14.65□□□□□ -0.06
CLIP3-201ENST00000360535 SALL3Q9BXA9 1300 aa14.65□□□□□ -0.06
CLIP3-201ENST00000360535 TPM2P07951 284 aa14.64□□□□□ -0.07
CLIP3-201ENST00000360535 AK2P54819 239 aa14.64□□□□□ -0.07
CLIP3-201ENST00000360535 DIAPH3Q9NSV4 1193 aa14.64□□□□□ -0.07
CLIP3-201ENST00000360535 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.64□□□□□ -0.07
CLIP3-201ENST00000360535 USP25Q9UHP3 1055 aa14.64□□□□□ -0.07
CLIP3-201ENST00000360535 NOL7Q9UMY1 257 aaKnown RBP14.64□□□□□ -0.07
CLIP3-201ENST00000360535 REREQ9P2R6 1566 aa14.64□□□□□ -0.07
CLIP3-201ENST00000360535 AIMP1Q12904 312 aaKnown RBP14.64□□□□□ -0.07
CLIP3-201ENST00000360535 CUL4AQ13619 759 aa14.64□□□□□ -0.07
CLIP3-201ENST00000360535 CCDC83Q8IWF9 413 aa14.64□□□□□ -0.07
CLIP3-201ENST00000360535 SYAP1Q96A49 352 aaPredicted RBP14.64□□□□□ -0.07
CLIP3-201ENST00000360535 SMC3Q9UQE7 1217 aa14.64□□□□□ -0.07
CLIP3-201ENST00000360535 VPS37CA5D8V6 355 aaPredicted RBP14.63□□□□□ -0.07
CLIP3-201ENST00000360535 C9orf78Q9NZ63 289 aaPredicted RBP14.63□□□□□ -0.07
CLIP3-201ENST00000360535 SNX14Q9Y5W7 946 aa14.63□□□□□ -0.07
CLIP3-201ENST00000360535 WDR33Q9C0J8 1336 aaKnown RBP14.63□□□□□ -0.07
CLIP3-201ENST00000360535 UQCRHLA0A096LP55 91 aa14.63□□□□□ -0.07
CLIP3-201ENST00000360535 UQCRHP07919 91 aa14.63□□□□□ -0.07
CLIP3-201ENST00000360535 TEFQ10587 303 aa14.63□□□□□ -0.07
CLIP3-201ENST00000360535 CNTROBQ8N137 903 aa14.63□□□□□ -0.07
CLIP3-201ENST00000360535 LRRC59Q96AG4 307 aaKnown RBP14.63□□□□□ -0.07
CLIP3-201ENST00000360535 TCEANC2Q96MN5 208 aa14.63□□□□□ -0.07
CLIP3-201ENST00000360535 ZKSCAN5Q9Y2L8 839 aa14.63□□□□□ -0.07
CLIP3-201ENST00000360535 PRPF40BQ6NWY9 871 aaKnown RBP14.62□□□□□ -0.07
CLIP3-201ENST00000360535 C17orf53Q8N3J3 647 aaPredicted RBP14.62□□□□□ -0.07
CLIP3-201ENST00000360535 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.62□□□□□ -0.07
CLIP3-201ENST00000360535 HCLS1P14317 486 aaPredicted RBP14.62□□□□□ -0.07
CLIP3-201ENST00000360535 HSPA4P34932 840 aa14.62□□□□□ -0.07
CLIP3-201ENST00000360535 ANAPC15P60006 121 aa14.62□□□□□ -0.07
CLIP3-201ENST00000360535 CCDC39Q9UFE4 941 aa14.62□□□□□ -0.07
CLIP3-201ENST00000360535 ADAMTS13Q76LX8 1427 aa14.62□□□□□ -0.07
CLIP3-201ENST00000360535 AKAP12Q02952 1782 aa14.62□□□□□ -0.07
CLIP3-201ENST00000360535 NECAB1Q8N987 351 aa14.62□□□□□ -0.07
CLIP3-201ENST00000360535 PDLIM2Q96JY6 352 aa14.62□□□□□ -0.07
CLIP3-201ENST00000360535 JAKMIP1Q96N16 626 aaKnown RBP14.62□□□□□ -0.07
CLIP3-201ENST00000360535 SIL1Q9H173 461 aa14.62□□□□□ -0.07
CLIP3-201ENST00000360535 STAP2Q9UGK3 403 aa14.62□□□□□ -0.07
CLIP3-201ENST00000360535 TTC21AQ8NDW8 1320 aa14.61□□□□□ -0.07
CLIP3-201ENST00000360535 LARGE1O95461 756 aa14.61□□□□□ -0.07
CLIP3-201ENST00000360535 SSH3Q8TE77 659 aa14.61□□□□□ -0.07
CLIP3-201ENST00000360535 DNAAF4Q8WXU2 420 aa14.61□□□□□ -0.07
CLIP3-201ENST00000360535 KIF1BPQ96EK5 621 aa14.61□□□□□ -0.07
CLIP3-201ENST00000360535 MAP3K5Q99683 1374 aa14.61□□□□□ -0.07
CLIP3-201ENST00000360535 FERMT3Q86UX7 667 aa14.61□□□□□ -0.07
CLIP3-201ENST00000360535 USP31Q70CQ4 1352 aa14.61□□□□□ -0.07
CLIP3-201ENST00000360535 SGSM2O43147 1006 aa14.6□□□□□ -0.07
CLIP3-201ENST00000360535 CWF19L2Q2TBE0 894 aaKnown RBP14.6□□□□□ -0.07
CLIP3-201ENST00000360535 PI4K2BQ8TCG2 481 aa14.6□□□□□ -0.07
CLIP3-201ENST00000360535 INTS4Q96HW7 963 aaKnown RBP14.6□□□□□ -0.07
CLIP3-201ENST00000360535 CCDC9Q9Y3X0 531 aaKnown RBP14.6□□□□□ -0.07
CLIP3-201ENST00000360535 PTPRUQ92729 1446 aa14.6□□□□□ -0.07
CLIP3-201ENST00000360535 SYT1P21579 422 aa14.6□□□□□ -0.07
CLIP3-201ENST00000360535 GIMAP6Q6P9H5 292 aa14.6□□□□□ -0.07
CLIP3-201ENST00000360535 KCNA6P17658 529 aa14.6□□□□□ -0.07
CLIP3-201ENST00000360535 PTH1RQ03431 593 aa14.6□□□□□ -0.07
CLIP3-201ENST00000360535 ADCK5Q3MIX3 580 aa14.6□□□□□ -0.07
CLIP3-201ENST00000360535 RUFY3Q7L099 469 aa14.6□□□□□ -0.07
CLIP3-201ENST00000360535 JARID2Q92833 1246 aaPredicted RBP14.6□□□□□ -0.07
CLIP3-201ENST00000360535 TTC12Q9H892 705 aaPredicted RBP14.6□□□□□ -0.07
CLIP3-201ENST00000360535 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.59□□□□□ -0.07
CLIP3-201ENST00000360535 PRAMEF22A3QJZ6 481 aa14.59□□□□□ -0.07
CLIP3-201ENST00000360535 BTBD11A6QL63 1104 aa14.59□□□□□ -0.07
CLIP3-201ENST00000360535 STX6O43752 255 aa14.59□□□□□ -0.07
CLIP3-201ENST00000360535 IFIT2P09913 472 aaKnown RBP14.59□□□□□ -0.07
CLIP3-201ENST00000360535 NBPF6Q5VWK0 638 aa14.59□□□□□ -0.07
CLIP3-201ENST00000360535 NBPF4Q96M43 638 aa14.59□□□□□ -0.07
CLIP3-201ENST00000360535 CCDC8Q9H0W5 538 aaPredicted RBP14.59□□□□□ -0.07
CLIP3-201ENST00000360535 TECPR2O15040 1411 aa14.59□□□□□ -0.07
CLIP3-201ENST00000360535 ZNF530Q6P9A1 599 aaPredicted RBP14.59□□□□□ -0.07
CLIP3-201ENST00000360535 CLASRPQ8N2M8 674 aaKnown RBP14.59□□□□□ -0.07
CLIP3-201ENST00000360535 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.59□□□□□ -0.07
CLIP3-201ENST00000360535 DNM1Q05193 864 aaKnown RBP14.59□□□□□ -0.07
CLIP3-201ENST00000360535 FAM173BQ6P4H8 233 aa14.59□□□□□ -0.07
CLIP3-201ENST00000360535 LIMCH1Q9UPQ0 1083 aa14.59□□□□□ -0.07
CLIP3-201ENST00000360535 GJB2P29033 226 aa14.58□□□□□ -0.08
CLIP3-201ENST00000360535 TSC1Q92574 1164 aa14.58□□□□□ -0.08
CLIP3-201ENST00000360535 RAB11FIP3O75154 756 aa14.58□□□□□ -0.08
CLIP3-201ENST00000360535 PHF14O94880 888 aa14.58□□□□□ -0.08
CLIP3-201ENST00000360535 ZSCAN22P10073 491 aaPredicted RBP14.58□□□□□ -0.08
CLIP3-201ENST00000360535 AACSQ86V21 672 aa14.58□□□□□ -0.08
CLIP3-201ENST00000360535 LSG1Q9H089 658 aaKnown RBP14.58□□□□□ -0.08
CLIP3-201ENST00000360535 MAP3K2Q9Y2U5 619 aa14.58□□□□□ -0.08
CLIP3-201ENST00000360535 RAD50Q92878 1312 aa14.58□□□□□ -0.08
CLIP3-201ENST00000360535 PROSER3Q2NL68 480 aa14.57□□□□□ -0.08
CLIP3-201ENST00000360535 PDRG1Q9NUG6 133 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms