RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 CCDC181Q5TID7 509 aa13.74□□□□□ -0.21
COL9A1-202ENST00000357250 LRP2BPQ9P2M1 347 aa13.74□□□□□ -0.21
COL9A1-202ENST00000357250 IFIT1P09914 478 aaKnown RBP13.74□□□□□ -0.21
COL9A1-202ENST00000357250 PARD3Q8TEW0 1356 aa13.74□□□□□ -0.21
COL9A1-202ENST00000357250 CHRNA2Q15822 529 aa13.74□□□□□ -0.21
COL9A1-202ENST00000357250 PUS7Q96PZ0 661 aaKnown RBP13.74□□□□□ -0.21
COL9A1-202ENST00000357250 GBP3Q9H0R5 595 aa13.74□□□□□ -0.21
COL9A1-202ENST00000357250 KDM6BO15054 1643 aa13.73□□□□□ -0.21
COL9A1-202ENST00000357250 NEMFO60524 1076 aa13.73□□□□□ -0.21
COL9A1-202ENST00000357250 RAI14Q9P0K7 980 aa13.73□□□□□ -0.21
COL9A1-202ENST00000357250 IGHDP01880 384 aa13.73□□□□□ -0.21
COL9A1-202ENST00000357250 SAMD1Q6SPF0 538 aaPredicted RBP13.73□□□□□ -0.21
COL9A1-202ENST00000357250 NUTM1Q86Y26 1132 aa13.73□□□□□ -0.21
COL9A1-202ENST00000357250 AXDND1Q5T1B0 1012 aaPredicted RBP13.73□□□□□ -0.21
COL9A1-202ENST00000357250 DDX19AQ9NUU7 478 aaKnown RBP13.73□□□□□ -0.21
COL9A1-202ENST00000357250 ABCC10Q5T3U5 1492 aa13.73□□□□□ -0.21
COL9A1-202ENST00000357250 METTL24Q5JXM2 366 aa13.72□□□□□ -0.21
COL9A1-202ENST00000357250 TEX14Q8IWB6 1497 aa13.72□□□□□ -0.21
COL9A1-202ENST00000357250 ZSCAN12O43309 604 aa13.72□□□□□ -0.21
COL9A1-202ENST00000357250 EVI5LQ96CN4 794 aa13.72□□□□□ -0.21
COL9A1-202ENST00000357250 RNF41Q9H4P4 317 aaPredicted RBP13.72□□□□□ -0.21
COL9A1-202ENST00000357250 MCM5P33992 734 aa13.72□□□□□ -0.21
COL9A1-202ENST00000357250 MBIPQ9NS73 344 aa13.72□□□□□ -0.21
COL9A1-202ENST00000357250 IDH1O75874 414 aaKnown RBP13.72□□□□□ -0.21
COL9A1-202ENST00000357250 HDAC1Q13547 482 aaPredicted RBP13.72□□□□□ -0.21
COL9A1-202ENST00000357250 POLKQ9UBT6 870 aa13.72□□□□□ -0.21
COL9A1-202ENST00000357250 EPB41L2O43491 1005 aaKnown RBP13.71□□□□□ -0.21
COL9A1-202ENST00000357250 RRP9O43818 475 aaKnown RBP13.71□□□□□ -0.21
COL9A1-202ENST00000357250 KDM4AO75164 1064 aa13.71□□□□□ -0.21
COL9A1-202ENST00000357250 SHANK2Q9UPX8 1470 aa13.71□□□□□ -0.21
COL9A1-202ENST00000357250 SFPQP23246 707 aaKnown RBP eCLIP13.71□□□□□ -0.21
COL9A1-202ENST00000357250 KRT24Q2M2I5 525 aa13.71□□□□□ -0.21
COL9A1-202ENST00000357250 PRPF40BQ6NWY9 871 aaKnown RBP13.71□□□□□ -0.21
COL9A1-202ENST00000357250 TEX13AQ9BXU3 409 aaPredicted RBP13.71□□□□□ -0.21
COL9A1-202ENST00000357250 ECHDC1Q9NTX5 307 aa13.71□□□□□ -0.21
COL9A1-202ENST00000357250 MAP3K12Q12852 859 aa13.71□□□□□ -0.22
COL9A1-202ENST00000357250 HMG20BQ9P0W2 317 aa13.71□□□□□ -0.22
COL9A1-202ENST00000357250 PIK3R4Q99570 1358 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 FLIIQ13045 1269 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 CCDC83Q8IWF9 413 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 TANGO6Q9C0B7 1094 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.7□□□□□ -0.22
COL9A1-202ENST00000357250 RIMS2Q9UQ26 1411 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 UHRF1BP1LA0JNW5 1464 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 SYCE3A1L190 88 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 PATL2C9JE40 543 aaKnown RBP13.7□□□□□ -0.22
COL9A1-202ENST00000357250 ZNF397Q8NF99 534 aaPredicted RBP13.7□□□□□ -0.22
COL9A1-202ENST00000357250 PHACTR3Q96KR7 559 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 UQCRHLA0A096LP55 91 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 UQCRHP07919 91 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 ARHGAP29Q52LW3 1261 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 ANKRD18AQ8IVF6 992 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 TBC1D2Q9BYX2 928 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 PDCL3Q9H2J4 239 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 CAVIN4Q5BKX8 364 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 FILIP1Q7Z7B0 1213 aa13.7□□□□□ -0.22
COL9A1-202ENST00000357250 UBXN4Q92575 508 aa13.69□□□□□ -0.22
COL9A1-202ENST00000357250 C8orf76Q96K31 380 aa13.69□□□□□ -0.22
COL9A1-202ENST00000357250 TMOD3Q9NYL9 352 aa13.69□□□□□ -0.22
COL9A1-202ENST00000357250 HSPA2P54652 639 aa13.69□□□□□ -0.22
COL9A1-202ENST00000357250 IFIT5Q13325 482 aaKnown RBP13.69□□□□□ -0.22
COL9A1-202ENST00000357250 ZRSR2Q15696 482 aaKnown RBP13.69□□□□□ -0.22
COL9A1-202ENST00000357250 CFAP100Q494V2 611 aa13.69□□□□□ -0.22
COL9A1-202ENST00000357250 PYM1Q9BRP8 204 aaKnown RBP13.69□□□□□ -0.22
COL9A1-202ENST00000357250 DMRT2Q9Y5R5 561 aa13.69□□□□□ -0.22
COL9A1-202ENST00000357250 CNKSR2Q8WXI2 1034 aa13.69□□□□□ -0.22
COL9A1-202ENST00000357250 PPP1R12BO60237 982 aaPredicted RBP13.68□□□□□ -0.22
COL9A1-202ENST00000357250 ATP2B2Q01814 1243 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 NAPBQ9H115 298 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 GOLGA6L7A0A1B0GV03 622 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 FGFR1OPO95684 399 aaKnown RBP13.68□□□□□ -0.22
COL9A1-202ENST00000357250 TMEM132AQ24JP5 1023 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 KRT28Q7Z3Y7 464 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 RAB34Q9BZG1 259 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 KIF20AO95235 890 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 EIF5P55010 431 aaKnown RBP13.68□□□□□ -0.22
COL9A1-202ENST00000357250 UVSSAQ2YD98 709 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 CCDC148Q8NFR7 591 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 TBC1D32Q96NH3 1257 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 LRRFIP2Q9Y608 721 aaKnown RBP13.68□□□□□ -0.22
COL9A1-202ENST00000357250 ASXL1Q8IXJ9 1541 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 A0A1W2PP64 1363 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 KCNA6P17658 529 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 MCM3P25205 808 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 TTF1Q15361 905 aaPredicted RBP13.68□□□□□ -0.22
COL9A1-202ENST00000357250 CTCFLQ8NI51 663 aaPredicted RBP13.68□□□□□ -0.22
COL9A1-202ENST00000357250 CABLES1Q8TDN4 633 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 ADGRL2O95490 1459 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 PPIP5K1Q6PFW1 1433 aa13.68□□□□□ -0.22
COL9A1-202ENST00000357250 KIAA0754O94854 1291 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 ADAMTS2O95450 1211 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 IQCA1Q86XH1 822 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 PCDHB15Q9Y5E8 787 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 ZMYM3Q14202 1370 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 GSDMDP57764 484 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 MYD88Q99836 296 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 TSPYL1Q9H0U9 437 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 BOLA2Q9H3K6 86 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 TTC21AQ8NDW8 1320 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 SLC5A1P13866 664 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms