RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 LRP5O75197 1615 aa10.38□□□□□ -0.75
VPS13A-201ENST00000355766 PTPRNQ16849 979 aa10.38□□□□□ -0.75
VPS13A-201ENST00000355766 TRPC5Q9UL62 973 aaPredicted RBP10.38□□□□□ -0.75
VPS13A-201ENST00000355766 ADAMTS2O95450 1211 aa10.37□□□□□ -0.75
VPS13A-201ENST00000355766 RSBN1LQ6PCB5 846 aaPredicted RBP10.37□□□□□ -0.75
VPS13A-201ENST00000355766 NALCNQ8IZF0 1738 aa10.37□□□□□ -0.75
VPS13A-201ENST00000355766 DDX17Q92841 729 aaKnown RBP10.37□□□□□ -0.75
VPS13A-201ENST00000355766 EVA1BQ9NVM1 165 aa10.37□□□□□ -0.75
VPS13A-201ENST00000355766 USP21Q9UK80 565 aa10.37□□□□□ -0.75
VPS13A-201ENST00000355766 CHIC2Q9UKJ5 165 aa10.37□□□□□ -0.75
VPS13A-201ENST00000355766 ANKRD50Q9ULJ7 1429 aa10.37□□□□□ -0.75
VPS13A-201ENST00000355766 PCDHB15Q9Y5E8 787 aa10.37□□□□□ -0.75
VPS13A-201ENST00000355766 SPDYE5A6NIY4 337 aa10.36□□□□□ -0.75
VPS13A-201ENST00000355766 C11orf95C9JLR9 678 aaPredicted RBP10.36□□□□□ -0.75
VPS13A-201ENST00000355766 SIAH2O43255 324 aa10.36□□□□□ -0.75
VPS13A-201ENST00000355766 GJA5P36382 358 aa10.36□□□□□ -0.75
VPS13A-201ENST00000355766 CCDC125Q86Z20 511 aa10.36□□□□□ -0.75
VPS13A-201ENST00000355766 COL22A1Q8NFW1 1626 aaPredicted RBP10.36□□□□□ -0.75
VPS13A-201ENST00000355766 C1orf167Q5SNV9 1468 aa10.36□□□□□ -0.75
VPS13A-201ENST00000355766 ALDH1A1P00352 501 aa10.35□□□□□ -0.75
VPS13A-201ENST00000355766 SH3BP2P78314 561 aa10.35□□□□□ -0.75
VPS13A-201ENST00000355766 DIXDC1Q155Q3 683 aa10.35□□□□□ -0.75
VPS13A-201ENST00000355766 FNBP4Q8N3X1 1017 aaPredicted RBP10.35□□□□□ -0.75
VPS13A-201ENST00000355766 EHBP1Q8NDI1 1231 aa10.35□□□□□ -0.75
VPS13A-201ENST00000355766 UNC93B1Q9H1C4 597 aa10.35□□□□□ -0.75
VPS13A-201ENST00000355766 ATP13A2Q9NQ11 1180 aa10.35□□□□□ -0.75
VPS13A-201ENST00000355766 IQGAP3Q86VI3 1631 aa10.35□□□□□ -0.75
VPS13A-201ENST00000355766 E9PCH4 1651 aa10.34□□□□□ -0.75
VPS13A-201ENST00000355766 SPTLC1O15269 473 aa10.34□□□□□ -0.75
VPS13A-201ENST00000355766 KCNH2Q12809 1159 aa10.34□□□□□ -0.75
VPS13A-201ENST00000355766 DESI1Q6ICB0 168 aa10.34□□□□□ -0.75
VPS13A-201ENST00000355766 MYOM2P54296 1465 aa10.34□□□□□ -0.75
VPS13A-201ENST00000355766 SOS2Q07890 1332 aaPredicted RBP10.33□□□□□ -0.76
VPS13A-201ENST00000355766 BLMP54132 1417 aaPredicted RBP10.33□□□□□ -0.76
VPS13A-201ENST00000355766 BAP1Q92560 729 aa10.33□□□□□ -0.76
VPS13A-201ENST00000355766 METP08581 1390 aa10.33□□□□□ -0.76
VPS13A-201ENST00000355766 BCL9LQ86UU0 1499 aa10.32□□□□□ -0.76
VPS13A-201ENST00000355766 PDE4DQ08499 809 aa10.32□□□□□ -0.76
VPS13A-201ENST00000355766 LINC01559Q495D7 138 aa10.32□□□□□ -0.76
VPS13A-201ENST00000355766 CFAP99D6REC4 459 aa10.31□□□□□ -0.76
VPS13A-201ENST00000355766 HRCP23327 699 aa10.31□□□□□ -0.76
VPS13A-201ENST00000355766 TREML4Q6UXN2 200 aa10.31□□□□□ -0.76
VPS13A-201ENST00000355766 RIC3Q7Z5B4 369 aa10.31□□□□□ -0.76
VPS13A-201ENST00000355766 LCE2AQ5TA79 106 aaPredicted RBP10.3□□□□□ -0.76
VPS13A-201ENST00000355766 LYPD8Q6UX82 237 aa10.3□□□□□ -0.76
VPS13A-201ENST00000355766 SLC24A3Q9HC58 644 aa10.3□□□□□ -0.76
VPS13A-201ENST00000355766 SPHKAPQ2M3C7 1700 aa10.3□□□□□ -0.76
VPS13A-201ENST00000355766 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.3□□□□□ -0.76
VPS13A-201ENST00000355766 SNRPBP14678 240 aaKnown RBP10.29□□□□□ -0.76
VPS13A-201ENST00000355766 PPARGC1BQ86YN6 1023 aaKnown RBP10.29□□□□□ -0.76
VPS13A-201ENST00000355766 CABLES1Q8TDN4 633 aa10.29□□□□□ -0.76
VPS13A-201ENST00000355766 ZBTB3Q9H5J0 574 aa10.29□□□□□ -0.76
VPS13A-201ENST00000355766 GLI3P10071 1580 aa10.29□□□□□ -0.76
VPS13A-201ENST00000355766 PRAG1Q86YV5 1406 aa10.28□□□□□ -0.76
VPS13A-201ENST00000355766 ZEB1P37275 1124 aaPredicted RBP10.28□□□□□ -0.76
VPS13A-201ENST00000355766 CSPP1Q1MSJ5 1256 aa10.28□□□□□ -0.76
VPS13A-201ENST00000355766 ZNF511Q8NB15 262 aa10.28□□□□□ -0.76
VPS13A-201ENST00000355766 RALGAPBQ86X10 1494 aa10.28□□□□□ -0.76
VPS13A-201ENST00000355766 CTHP32929 405 aa10.27□□□□□ -0.77
VPS13A-201ENST00000355766 PRPF38BQ5VTL8 546 aaKnown RBP10.27□□□□□ -0.77
VPS13A-201ENST00000355766 DEFB132Q7Z7B7 95 aa10.27□□□□□ -0.77
VPS13A-201ENST00000355766 GJD4Q96KN9 370 aaPredicted RBP10.27□□□□□ -0.77
VPS13A-201ENST00000355766 TRIM47Q96LD4 638 aa10.27□□□□□ -0.77
VPS13A-201ENST00000355766 ORAI2Q96SN7 254 aa10.27□□□□□ -0.77
VPS13A-201ENST00000355766 WASF2Q9Y6W5 498 aa10.27□□□□□ -0.77
VPS13A-201ENST00000355766 PXDNQ92626 1479 aa10.27□□□□□ -0.77
VPS13A-201ENST00000355766 NEXMIFQ5QGS0 1516 aa10.27□□□□□ -0.77
VPS13A-201ENST00000355766 MARF1Q9Y4F3 1742 aaKnown RBP10.27□□□□□ -0.77
VPS13A-201ENST00000355766 MYSM1Q5VVJ2 828 aa10.26□□□□□ -0.77
VPS13A-201ENST00000355766 LIMD1Q9UGP4 676 aa10.26□□□□□ -0.77
VPS13A-201ENST00000355766 SLIT2O94813 1529 aa10.26□□□□□ -0.77
VPS13A-201ENST00000355766 CDC42BPGQ6DT37 1551 aa10.26□□□□□ -0.77
VPS13A-201ENST00000355766 SENP2Q9HC62 589 aa10.25□□□□□ -0.77
VPS13A-201ENST00000355766 TLL2Q9Y6L7 1015 aa10.25□□□□□ -0.77
VPS13A-201ENST00000355766 NPHP3Q7Z494 1330 aa10.25□□□□□ -0.77
VPS13A-201ENST00000355766 ACIN1Q9UKV3 1341 aaKnown RBP10.25□□□□□ -0.77
VPS13A-201ENST00000355766 ROBO2Q9HCK4 1378 aa10.25□□□□□ -0.77
VPS13A-201ENST00000355766 VARSP26640 1264 aaKnown RBP10.24□□□□□ -0.77
VPS13A-201ENST00000355766 SF3B2Q13435 895 aaKnown RBP10.24□□□□□ -0.77
VPS13A-201ENST00000355766 MAP10Q9P2G4 905 aa10.24□□□□□ -0.77
VPS13A-201ENST00000355766 CLSPNQ9HAW4 1339 aa10.24□□□□□ -0.77
VPS13A-201ENST00000355766 F12P00748 615 aaPredicted RBP10.23□□□□□ -0.77
VPS13A-201ENST00000355766 QPCTQ16769 361 aa10.23□□□□□ -0.77
VPS13A-201ENST00000355766 HFM1A2PYH4 1435 aa10.23□□□□□ -0.77
VPS13A-201ENST00000355766 USP32Q8NFA0 1604 aa10.22□□□□□ -0.77
VPS13A-201ENST00000355766 CAPN5O15484 640 aaPredicted RBP10.22□□□□□ -0.77
VPS13A-201ENST00000355766 PER1O15534 1290 aaPredicted RBP10.22□□□□□ -0.77
VPS13A-201ENST00000355766 WFS1O76024 890 aa10.22□□□□□ -0.77
VPS13A-201ENST00000355766 FAM50AQ14320 339 aaKnown RBP10.22□□□□□ -0.77
VPS13A-201ENST00000355766 ZNF326Q5BKZ1 582 aaKnown RBP10.22□□□□□ -0.77
VPS13A-201ENST00000355766 UNC5CLQ8IV45 518 aa10.22□□□□□ -0.77
VPS13A-201ENST00000355766 NUP155O75694 1391 aa10.22□□□□□ -0.77
VPS13A-201ENST00000355766 ROCK1Q13464 1354 aa10.22□□□□□ -0.77
VPS13A-201ENST00000355766 NFX1Q12986 1120 aaKnown RBP10.21□□□□□ -0.77
VPS13A-201ENST00000355766 TUSC1Q2TAM9 212 aa10.21□□□□□ -0.77
VPS13A-201ENST00000355766 KIFC2Q96AC6 838 aa10.21□□□□□ -0.77
VPS13A-201ENST00000355766 CLTCL1P53675 1640 aa10.21□□□□□ -0.78
VPS13A-201ENST00000355766 LILRB3O75022 631 aa10.2□□□□□ -0.78
VPS13A-201ENST00000355766 BMP1P13497 986 aa10.2□□□□□ -0.78
VPS13A-201ENST00000355766 BRWD3Q6RI45 1802 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms