RNA–Protein interactions for RNA: ENST00000354901.8

SMG6-202, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best) BASIC

Gene SMG6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-202ENST00000354901 NCOA3Q9Y6Q9 1424 aa11.36□□□□□ -0.59
SMG6-202ENST00000354901 BAG4O95429 457 aaKnown RBP11.36□□□□□ -0.59
SMG6-202ENST00000354901 ZGPATQ8N5A5 531 aaKnown RBP11.36□□□□□ -0.59
SMG6-202ENST00000354901 ATP10DQ9P241 1426 aa11.36□□□□□ -0.59
SMG6-202ENST00000354901 RABEP1Q15276 862 aa11.35□□□□□ -0.59
SMG6-202ENST00000354901 RILPL2Q969X0 211 aa11.35□□□□□ -0.59
SMG6-202ENST00000354901 FMN2Q9NZ56 1722 aa11.35□□□□□ -0.59
SMG6-202ENST00000354901 TRIM6-TRIM34B2RNG4 842 aa11.35□□□□□ -0.59
SMG6-202ENST00000354901 HMMRO75330 724 aa11.35□□□□□ -0.59
SMG6-202ENST00000354901 TTC12Q9H892 705 aaPredicted RBP11.35□□□□□ -0.59
SMG6-202ENST00000354901 KIF3AQ9Y496 699 aa11.35□□□□□ -0.59
SMG6-202ENST00000354901 RGS12O14924 1447 aa11.35□□□□□ -0.59
SMG6-202ENST00000354901 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.34□□□□□ -0.595e-9■■■■■ 28.9
SMG6-202ENST00000354901 KLHL40Q2TBA0 621 aa11.34□□□□□ -0.59
SMG6-202ENST00000354901 PTPRCP08575 1304 aa11.34□□□□□ -0.59
SMG6-202ENST00000354901 NWD1Q149M9 1564 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 MYRIPQ8NFW9 859 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 USP6P35125 1406 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 USP54Q70EL1 1684 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 NALCNQ8IZF0 1738 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 CHMP4CQ96CF2 233 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 TTC21AQ8NDW8 1320 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 PNMA6EA0A0J9YXQ4 647 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 EIF2S2P20042 333 aaKnown RBP11.33□□□□□ -0.6
SMG6-202ENST00000354901 PDE1AP54750 535 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 BCL2L12Q9HB09 334 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 IL1RAPL2Q9NP60 686 aa11.33□□□□□ -0.6
SMG6-202ENST00000354901 GNAI2P04899 355 aa11.32□□□□□ -0.6
SMG6-202ENST00000354901 NEK4P51957 841 aa11.32□□□□□ -0.6
SMG6-202ENST00000354901 FLIIQ13045 1269 aa11.32□□□□□ -0.6
SMG6-202ENST00000354901 NPHP4O75161 1426 aaPredicted RBP11.32□□□□□ -0.6
SMG6-202ENST00000354901 ST18O60284 1047 aa11.32□□□□□ -0.6
SMG6-202ENST00000354901 MAP4K4O95819 1239 aaPredicted RBP11.32□□□□□ -0.6
SMG6-202ENST00000354901 REC8O95072 547 aa11.32□□□□□ -0.6
SMG6-202ENST00000354901 ANO2Q9NQ90 1003 aa11.32□□□□□ -0.6
SMG6-202ENST00000354901 OVOS2A0A0J9YW53 1432 aa11.31□□□□□ -0.6
SMG6-202ENST00000354901 OVOS2Q6IE36 1432 aa11.31□□□□□ -0.6
SMG6-202ENST00000354901 KIAA0232Q92628 1395 aa11.31□□□□□ -0.6
SMG6-202ENST00000354901 ERC2O15083 957 aa11.31□□□□□ -0.6
SMG6-202ENST00000354901 IRX5P78411 483 aaPredicted RBP11.31□□□□□ -0.6
SMG6-202ENST00000354901 LRRFIP2Q9Y608 721 aaKnown RBP11.31□□□□□ -0.6
SMG6-202ENST00000354901 CRB1P82279 1406 aa11.31□□□□□ -0.6
SMG6-202ENST00000354901 SSH2Q76I76 1423 aa11.31□□□□□ -0.6
SMG6-202ENST00000354901 CCT4P50991 539 aaKnown RBP11.31□□□□□ -0.6
SMG6-202ENST00000354901 ABTB2Q8N961 1025 aa11.31□□□□□ -0.6
SMG6-202ENST00000354901 TRIM34Q9BYJ4 488 aa11.31□□□□□ -0.6
SMG6-202ENST00000354901 PTMSP20962 102 aa11.3□□□□□ -0.6
SMG6-202ENST00000354901 ANXA1P04083 346 aa11.3□□□□□ -0.6
SMG6-202ENST00000354901 LRRCC1Q9C099 1032 aa11.3□□□□□ -0.6
SMG6-202ENST00000354901 FLT4P35916 1363 aa11.3□□□□□ -0.6
SMG6-202ENST00000354901 KIF24Q5T7B8 1368 aa11.3□□□□□ -0.6
SMG6-202ENST00000354901 GNAT3A8MTJ3 354 aa11.29□□□□□ -0.6
SMG6-202ENST00000354901 APPP05067 770 aa11.29□□□□□ -0.6
SMG6-202ENST00000354901 CHAF1AQ13111 956 aaPredicted RBP11.29□□□□□ -0.6
SMG6-202ENST00000354901 UPF3BQ9BZI7 483 aaKnown RBP11.29□□□□□ -0.6
SMG6-202ENST00000354901 PHAXQ9H814 394 aaKnown RBP11.29□□□□□ -0.6
SMG6-202ENST00000354901 CCDC30Q5VVM6 783 aa11.29□□□□□ -0.6
SMG6-202ENST00000354901 NUTM1Q86Y26 1132 aa11.29□□□□□ -0.6
SMG6-202ENST00000354901 USP31Q70CQ4 1352 aa11.29□□□□□ -0.6
SMG6-202ENST00000354901 BRD2P25440 801 aaKnown RBP11.29□□□□□ -0.6
SMG6-202ENST00000354901 IRX3P78415 501 aaPredicted RBP11.29□□□□□ -0.6
SMG6-202ENST00000354901 IL17REQ8NFR9 667 aa11.29□□□□□ -0.6
SMG6-202ENST00000354901 USP25Q9UHP3 1055 aa11.29□□□□□ -0.6
SMG6-202ENST00000354901 MX1P20591 662 aa11.28□□□□□ -0.6
SMG6-202ENST00000354901 NUCB2P80303 420 aa11.28□□□□□ -0.6
SMG6-202ENST00000354901 HDGFL1Q5TGJ6 251 aa11.28□□□□□ -0.6
SMG6-202ENST00000354901 UNC5CLQ8IV45 518 aa11.28□□□□□ -0.6
SMG6-202ENST00000354901 PALD1Q9ULE6 856 aa11.28□□□□□ -0.6
SMG6-202ENST00000354901 PEAK1Q9H792 1746 aa11.28□□□□□ -0.6
SMG6-202ENST00000354901 NOLC1Q14978 699 aaKnown RBP eCLIP11.28□□□□□ -0.6
SMG6-202ENST00000354901 SECISBP2LQ93073 1101 aaKnown RBP11.28□□□□□ -0.6
SMG6-202ENST00000354901 ADGRL3Q9HAR2 1447 aa11.28□□□□□ -0.6
SMG6-202ENST00000354901 DTNBO60941 627 aa11.28□□□□□ -0.6
SMG6-202ENST00000354901 TNNT3P45378 269 aaPredicted RBP11.28□□□□□ -0.6
SMG6-202ENST00000354901 HS1BP3Q53T59 392 aa11.28□□□□□ -0.6
SMG6-202ENST00000354901 NSFL1CQ9UNZ2 370 aaKnown RBP11.28□□□□□ -0.6
SMG6-202ENST00000354901 SBNO1A3KN83 1393 aa11.27□□□□□ -0.61
SMG6-202ENST00000354901 GNAI3P08754 354 aa11.27□□□□□ -0.61
SMG6-202ENST00000354901 HMGN5P82970 282 aaKnown RBP11.27□□□□□ -0.61
SMG6-202ENST00000354901 SPC24Q8NBT2 197 aa11.27□□□□□ -0.61
SMG6-202ENST00000354901 UBTFL1P0CB47 393 aaPredicted RBP11.27□□□□□ -0.61
SMG6-202ENST00000354901 KCNA6P17658 529 aa11.27□□□□□ -0.61
SMG6-202ENST00000354901 HOXC9P31274 260 aa11.27□□□□□ -0.61
SMG6-202ENST00000354901 LARP6Q9BRS8 491 aaKnown RBP11.27□□□□□ -0.61
SMG6-202ENST00000354901 TMX1Q9H3N1 280 aa11.27□□□□□ -0.61
SMG6-202ENST00000354901 TMEM63CQ9P1W3 806 aa11.27□□□□□ -0.61
SMG6-202ENST00000354901 IGSF1Q8N6C5 1336 aa11.27□□□□□ -0.61
SMG6-202ENST00000354901 ARHGEF10O15013 1369 aa11.26□□□□□ -0.61
SMG6-202ENST00000354901 SURF6O75683 361 aaKnown RBP11.26□□□□□ -0.61
SMG6-202ENST00000354901 LMOD2Q6P5Q4 547 aa11.26□□□□□ -0.61
SMG6-202ENST00000354901 ZNF445P59923 1031 aa11.26□□□□□ -0.61
SMG6-202ENST00000354901 RIOK3O14730 519 aaKnown RBP11.26□□□□□ -0.61
SMG6-202ENST00000354901 TMX3Q96JJ7 454 aa11.26□□□□□ -0.61
SMG6-202ENST00000354901 ESYT1Q9BSJ8 1104 aa11.26□□□□□ -0.61
SMG6-202ENST00000354901 GDPD2Q9HCC8 539 aa11.26□□□□□ -0.61
SMG6-202ENST00000354901 GPT2Q8TD30 523 aa11.25□□□□□ -0.61
SMG6-202ENST00000354901 PDLIM2Q96JY6 352 aa11.25□□□□□ -0.61
SMG6-202ENST00000354901 USP44Q9H0E7 712 aa11.25□□□□□ -0.61
SMG6-202ENST00000354901 LMBRD1Q9NUN5 540 aa11.25□□□□□ -0.61
SMG6-202ENST00000354901 ZDHHC9Q9Y397 364 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms