RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 LARGE1O95461 756 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 G2E3Q7L622 706 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 CCDC186Q7Z3E2 898 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 KIF18AQ8NI77 898 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 ZRANB1Q9UGI0 708 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 PREX1Q8TCU6 1659 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 GOLGA6L6A8MZA4 724 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 CHL1O00533 1208 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 AK2P54819 239 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 PDE4CQ08493 712 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 LUZP1Q86V48 1076 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 LRRCC1Q9C099 1032 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 SNX14Q9Y5W7 946 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 MRVI1Q9Y6F6 885 aa8.13□□□□□ -1.11
VPS39-202ENST00000348544 POGZQ7Z3K3 1410 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 PNMA6EA0A0J9YXQ4 647 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 VGLL3A8MV65 326 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 TNNT1P13805 278 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 TERF2Q15554 542 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 RASEFQ8IZ41 740 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 FAM200AQ8TCP9 573 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 BCL11BQ9C0K0 894 aaPredicted RBP8.12□□□□□ -1.11
VPS39-202ENST00000348544 STAP2Q9UGK3 403 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 MTMR6Q9Y217 621 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 CCDC192P0DO97 292 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 CPA1P15085 419 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 IRX5P78411 483 aaPredicted RBP8.12□□□□□ -1.11
VPS39-202ENST00000348544 ZSCAN25Q6NSZ9 544 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 SLC4A10Q6U841 1118 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 KLHL34Q8N239 644 aa8.12□□□□□ -1.11
VPS39-202ENST00000348544 RAD50Q92878 1312 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 MCM10Q7L590 875 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 NME9Q86XW9 330 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 AEBP1Q8IUX7 1158 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 NAP1L2Q9ULW6 460 aaPredicted RBP8.11□□□□□ -1.11
VPS39-202ENST00000348544 LIG1P18858 919 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 TYRO3Q06418 890 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 RRS1Q15050 365 aaKnown RBP8.11□□□□□ -1.11
VPS39-202ENST00000348544 KMT5BQ4FZB7 885 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 CBX8Q9HC52 389 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 FAM53CQ9NYF3 392 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 LIMCH1Q9UPQ0 1083 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 SMC3Q9UQE7 1217 aa8.11□□□□□ -1.11
VPS39-202ENST00000348544 GNAI2P04899 355 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 ST3GAL1Q11201 340 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 IDI1Q13907 227 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 CAMK4Q16566 473 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 CCDC144BQ3MJ40 725 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 TTC6Q86TZ1 520 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 PLA2G4DQ86XP0 818 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 CCDC144CPQ8IYA2 1237 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 CCDC112Q8NEF3 446 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 CACTINQ8WUQ7 758 aaKnown RBP8.1□□□□□ -1.11
VPS39-202ENST00000348544 MYO5BQ9ULV0 1848 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 ATP7BP35670 1465 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 ERBB3P21860 1342 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 MAP4K4O95819 1239 aaPredicted RBP8.1□□□□□ -1.11
VPS39-202ENST00000348544 GJB2P29033 226 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 KCNJ4P48050 445 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 ZNF75DP51815 510 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 CCDC83Q8IWF9 413 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 LSG1Q9H089 658 aaKnown RBP8.1□□□□□ -1.11
VPS39-202ENST00000348544 ST7Q9NRC1 585 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 CHMP3Q9Y3E7 222 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.1□□□□□ -1.11
VPS39-202ENST00000348544 ATP6V1DQ9Y5K8 247 aa8.1□□□□□ -1.11
VPS39-202ENST00000348544 USP27XA6NNY8 438 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 SGSM2O43147 1006 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 EPB41L2O43491 1005 aaKnown RBP8.09□□□□□ -1.11
VPS39-202ENST00000348544 CCT4P50991 539 aaKnown RBP8.09□□□□□ -1.11
VPS39-202ENST00000348544 MAP3K11Q16584 847 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 ANO6Q4KMQ2 910 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 CKAP2LQ8IYA6 745 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 KRT222Q8N1A0 295 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 MIS18AQ9NYP9 233 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.09□□□□□ -1.11
VPS39-202ENST00000348544 PAXBP1Q9Y5B6 917 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 V9GYY5 206 aaPredicted RBP8.09□□□□□ -1.11
VPS39-202ENST00000348544 RBM6P78332 1123 aaKnown RBP8.09□□□□□ -1.11
VPS39-202ENST00000348544 NUP62CLQ9H1M0 184 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 IL1RAPL2Q9NP60 686 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 HYPKQ9NX55 129 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 ZNF215Q9UL58 517 aaPredicted RBP8.09□□□□□ -1.11
VPS39-202ENST00000348544 AATKQ6ZMQ8 1374 aa8.09□□□□□ -1.11
VPS39-202ENST00000348544 CRB1P82279 1406 aa8.09□□□□□ -1.12
VPS39-202ENST00000348544 HAP1P54257 671 aaPredicted RBP8.08□□□□□ -1.12
VPS39-202ENST00000348544 ATP8B2P98198 1209 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 TPD52L1Q16890 204 aaPredicted RBP8.08□□□□□ -1.12
VPS39-202ENST00000348544 FAM173BQ6P4H8 233 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 FBXO38Q6PIJ6 1188 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 NUTM1Q86Y26 1132 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 DRC7Q8IY82 874 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 ZNF397Q8NF99 534 aaPredicted RBP8.08□□□□□ -1.12
VPS39-202ENST00000348544 RTF1Q92541 710 aaKnown RBP8.08□□□□□ -1.12
VPS39-202ENST00000348544 VPS37CA5D8V6 355 aaPredicted RBP8.08□□□□□ -1.12
VPS39-202ENST00000348544 ARID5BQ14865 1188 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 CEP135Q66GS9 1140 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 TDRD7Q8NHU6 1098 aaKnown RBP8.08□□□□□ -1.12
VPS39-202ENST00000348544 PI4K2BQ8TCG2 481 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 ZNF592Q92610 1267 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms