RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 SYNE3Q6ZMZ3 975 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 SMARCE1Q969G3 411 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 PHRF1Q9P1Y6 1649 aaKnown RBP3.88□□□□□ -1.79
CSMD3-202ENST00000339701 ATF7IPQ6VMQ6 1270 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 ZNF692Q9BU19 519 aaPredicted RBP3.88□□□□□ -1.79
CSMD3-202ENST00000339701 POTEB2H3BUK9 544 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 NDC80O14777 642 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 TXLNAP40222 546 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 TRAF1Q13077 416 aa3.88□□□□□ -1.79
CSMD3-202ENST00000339701 PPRC1Q5VV67 1664 aaKnown RBP3.87□□□□□ -1.79
CSMD3-202ENST00000339701 PDE6BP35913 854 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 TNNI2P48788 182 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 HSPA2P54652 639 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 CEP128Q6ZU80 1094 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC125Q86Z20 511 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 ZNF408Q9H9D4 720 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 ZNF287Q9HBT7 754 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 KIF20AO95235 890 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 LEKR1Q6ZMV7 388 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 UBE2Q2Q8WVN8 375 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 CENPHQ9H3R5 247 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 SLC5A4Q9NY91 659 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 FMN2Q9NZ56 1722 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC152Q4G0S7 254 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 EP400NLQ6ZTU2 488 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 ZBTB33Q86T24 672 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 SLC4A3P48751 1232 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 ELMSAN1Q6PJG2 1045 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 MICALCLQ6ZW33 695 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 HOMEZQ8IX15 550 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 ZC3H15Q8WU90 426 aaKnown RBP3.87□□□□□ -1.79
CSMD3-202ENST00000339701 HINFPQ9BQA5 517 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 MED14O60244 1454 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC27Q2M243 656 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 DYDC1Q8WWB3 177 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 SLC4A8Q2Y0W8 1093 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 CROCCP2Q86T23 111 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 BRMS1Q9HCU9 246 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.87□□□□□ -1.79
CSMD3-202ENST00000339701 C9orf78Q9NZ63 289 aaPredicted RBP3.87□□□□□ -1.79
CSMD3-202ENST00000339701 MYO5BQ9ULV0 1848 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 H7C1D1 291 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 HSPA5P11021 654 aaKnown RBP3.87□□□□□ -1.79
CSMD3-202ENST00000339701 AKAP12Q02952 1782 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 ANKRD18BA2A2Z9 1011 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 FCHSD2O94868 740 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 MRE11P49959 708 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 ANKRD1Q15327 319 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 SALL2Q9Y467 1007 aaPredicted RBP3.87□□□□□ -1.79
CSMD3-202ENST00000339701 PLCH2O75038 1416 aa3.87□□□□□ -1.79
CSMD3-202ENST00000339701 SP100P23497 879 aaPredicted RBP3.86□□□□□ -1.79
CSMD3-202ENST00000339701 ECE1P42892 770 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 PPP4R3BQ5MIZ7 849 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC83Q8IWF9 413 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 LBHD1Q9BQE6 289 aaPredicted RBP3.86□□□□□ -1.79
CSMD3-202ENST00000339701 CARMIL3Q8ND23 1372 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 NCOA3Q9Y6Q9 1424 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 RICTORQ6R327 1708 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 FAM196AQ6ZSG2 479 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 UTP14AQ9BVJ6 771 aaKnown RBP3.86□□□□□ -1.79
CSMD3-202ENST00000339701 RTCBQ9Y3I0 505 aaKnown RBP3.86□□□□□ -1.79
CSMD3-202ENST00000339701 SMC2O95347 1197 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 MPHOSPH8Q99549 860 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 ADGRL3Q9HAR2 1447 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 HOXD10P28358 340 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 SLC26A8Q96RN1 970 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 PLVAPQ9BX97 442 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 ZMYND15Q9H091 742 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 CLIP2Q9UDT6 1046 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 STK25O00506 426 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 E9PCH4 1651 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 PRAG1Q86YV5 1406 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 H0YIN7 160 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 SAFBQ15424 915 aaKnown RBP eCLIP3.86□□□□□ -1.79
CSMD3-202ENST00000339701 PLCD4Q9BRC7 762 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 NOC2LQ9Y3T9 749 aaKnown RBP3.86□□□□□ -1.79
CSMD3-202ENST00000339701 MADDQ8WXG6 1647 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 STAMBPO95630 424 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 SKIV2LQ15477 1246 aaKnown RBP3.86□□□□□ -1.79
CSMD3-202ENST00000339701 JAKMIP3Q5VZ66 844 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 DUOX1Q9NRD9 1551 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 C19orf44Q9H6X5 657 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 CEP83Q9Y592 693 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 ZFYVE16Q7Z3T8 1539 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 KIAA0754O94854 1291 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 VSIG10Q8N0Z9 540 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 MPNDQ8N594 471 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 NBPF15Q8N660 670 aa3.86□□□□□ -1.79
CSMD3-202ENST00000339701 CLUL1Q15846 466 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 TRAK1Q9UPV9 953 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 H0YHG0 523 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 KCNA4P22459 653 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 PSMA5P28066 241 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 RBM6P78332 1123 aaKnown RBP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 ERC1Q8IUD2 1116 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 ABCC11Q96J66 1382 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 PPP4R3AQ6IN85 833 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 FILIP1Q7Z7B0 1213 aa3.85□□□□□ -1.79
CSMD3-202ENST00000339701 CCDC94Q9BW85 323 aaPredicted RBP3.85□□□□□ -1.79
CSMD3-202ENST00000339701 TEX13AQ9BXU3 409 aaPredicted RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms