RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 FNBP4Q8N3X1 1017 aaPredicted RBP19.49■□□□□ 0.71
LIMS1-202ENST00000338045 HYPKQ9NX55 129 aa19.49■□□□□ 0.71
LIMS1-202ENST00000338045 PROSER3Q2NL68 480 aa19.48■□□□□ 0.71
LIMS1-202ENST00000338045 SMC5Q8IY18 1101 aa19.48■□□□□ 0.71
LIMS1-202ENST00000338045 ANXA1P04083 346 aa19.48■□□□□ 0.71
LIMS1-202ENST00000338045 MEIS3Q99687 375 aa19.48■□□□□ 0.71
LIMS1-202ENST00000338045 C1orf115Q9H7X2 142 aa19.48■□□□□ 0.71
LIMS1-202ENST00000338045 ATP10DQ9P241 1426 aa19.47■□□□□ 0.71
LIMS1-202ENST00000338045 SIRT2Q8IXJ6 389 aa19.47■□□□□ 0.71
LIMS1-202ENST00000338045 TMOD3Q9NYL9 352 aa19.47■□□□□ 0.71
LIMS1-202ENST00000338045 LAMB4A4D0S4 1761 aa19.46■□□□□ 0.71
LIMS1-202ENST00000338045 USP16Q9Y5T5 823 aa19.46■□□□□ 0.71
LIMS1-202ENST00000338045 ADCY9O60503 1353 aa19.46■□□□□ 0.71
LIMS1-202ENST00000338045 VPS72Q15906 364 aa19.45■□□□□ 0.7
LIMS1-202ENST00000338045 NGLY1Q96IV0 654 aa19.45■□□□□ 0.7
LIMS1-202ENST00000338045 C8orf37Q96NL8 207 aa19.45■□□□□ 0.7
LIMS1-202ENST00000338045 PI4KAP2A4QPH2 592 aa19.45■□□□□ 0.7
LIMS1-202ENST00000338045 HSPA1LP34931 641 aa19.45■□□□□ 0.7
LIMS1-202ENST00000338045 PI4KAP1Q8N8J0 262 aa19.45■□□□□ 0.7
LIMS1-202ENST00000338045 DNAAF4Q8WXU2 420 aa19.45■□□□□ 0.7
LIMS1-202ENST00000338045 DDB1Q16531 1140 aa19.44■□□□□ 0.7
LIMS1-202ENST00000338045 LRP10Q7Z4F1 713 aa19.44■□□□□ 0.7
LIMS1-202ENST00000338045 PIGBQ92521 554 aa19.44■□□□□ 0.7
LIMS1-202ENST00000338045 PDZRN3Q9UPQ7 1066 aa19.44■□□□□ 0.7
LIMS1-202ENST00000338045 ITGB4P16144 1822 aa19.44■□□□□ 0.7
LIMS1-202ENST00000338045 RPAP2Q8IXW5 612 aaPredicted RBP19.43■□□□□ 0.7
LIMS1-202ENST00000338045 ERBB4Q15303 1308 aa19.43■□□□□ 0.7
LIMS1-202ENST00000338045 BCL9O00512 1426 aa19.43■□□□□ 0.7
LIMS1-202ENST00000338045 BEND3Q5T5X7 828 aa19.43■□□□□ 0.7
LIMS1-202ENST00000338045 KSR2Q6VAB6 950 aa19.43■□□□□ 0.7
LIMS1-202ENST00000338045 ANKRD44Q8N8A2 993 aa19.43■□□□□ 0.7
LIMS1-202ENST00000338045 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.43■□□□□ 0.7
LIMS1-202ENST00000338045 GNAI3P08754 354 aa19.42■□□□□ 0.7
LIMS1-202ENST00000338045 CEP85Q6P2H3 762 aa19.42■□□□□ 0.7
LIMS1-202ENST00000338045 CCDC9Q9Y3X0 531 aaKnown RBP19.42■□□□□ 0.7
LIMS1-202ENST00000338045 GCC1Q96CN9 775 aa19.41■□□□□ 0.7
LIMS1-202ENST00000338045 SRCIN1Q9C0H9 1055 aa19.41■□□□□ 0.7
LIMS1-202ENST00000338045 USP44Q9H0E7 712 aa19.41■□□□□ 0.7
LIMS1-202ENST00000338045 DDX58O95786 925 aaKnown RBP19.4■□□□□ 0.7
LIMS1-202ENST00000338045 RGS3P49796 1198 aa19.4■□□□□ 0.7
LIMS1-202ENST00000338045 ATG3Q9NT62 314 aa19.4■□□□□ 0.7
LIMS1-202ENST00000338045 GNAI2P04899 355 aa19.39■□□□□ 0.7
LIMS1-202ENST00000338045 VSIG10Q8N0Z9 540 aa19.39■□□□□ 0.7
LIMS1-202ENST00000338045 ASAP1Q9ULH1 1129 aa19.39■□□□□ 0.7
LIMS1-202ENST00000338045 MAP3K2Q9Y2U5 619 aa19.39■□□□□ 0.7
LIMS1-202ENST00000338045 IBTKQ9P2D0 1353 aaPredicted RBP19.39■□□□□ 0.69
LIMS1-202ENST00000338045 PTCD1O75127 700 aaKnown RBP19.39■□□□□ 0.69
LIMS1-202ENST00000338045 MARCH10Q8NA82 808 aaPredicted RBP19.39■□□□□ 0.69
LIMS1-202ENST00000338045 RBM19Q9Y4C8 960 aaKnown RBP19.39■□□□□ 0.69
LIMS1-202ENST00000338045 DOT1LQ8TEK3 1739 aa19.38■□□□□ 0.69
LIMS1-202ENST00000338045 MYL6BP14649 208 aa19.38■□□□□ 0.69
LIMS1-202ENST00000338045 NUCB1Q02818 461 aa19.38■□□□□ 0.69
LIMS1-202ENST00000338045 USP21Q9UK80 565 aa19.38■□□□□ 0.69
LIMS1-202ENST00000338045 ALDH1L1O75891 902 aa19.37■□□□□ 0.69
LIMS1-202ENST00000338045 COPS6Q7L5N1 327 aa19.37■□□□□ 0.69
LIMS1-202ENST00000338045 XAGE3Q8WTP9 111 aa19.37■□□□□ 0.69
LIMS1-202ENST00000338045 DCTPP1Q9H773 170 aa19.37■□□□□ 0.69
LIMS1-202ENST00000338045 NBPF26B4DH59 902 aa19.36■□□□□ 0.69
LIMS1-202ENST00000338045 AIMP1Q12904 312 aaKnown RBP19.36■□□□□ 0.69
LIMS1-202ENST00000338045 FAM98CQ17RN3 349 aaKnown RBP19.36■□□□□ 0.69
LIMS1-202ENST00000338045 NBPF14Q5TI25 921 aa19.36■□□□□ 0.69
LIMS1-202ENST00000338045 NBPF10Q6P3W6 841 aaKnown RBP19.36■□□□□ 0.69
LIMS1-202ENST00000338045 NBPF15Q8N660 670 aa19.36■□□□□ 0.69
LIMS1-202ENST00000338045 PDE4AP27815 886 aa19.35■□□□□ 0.69
LIMS1-202ENST00000338045 PRIM1P49642 420 aaKnown RBP19.35■□□□□ 0.69
LIMS1-202ENST00000338045 LINS1Q8NG48 757 aa19.35■□□□□ 0.69
LIMS1-202ENST00000338045 TEX13AQ9BXU3 409 aaPredicted RBP19.35■□□□□ 0.69
LIMS1-202ENST00000338045 UBTFL1P0CB47 393 aaPredicted RBP19.35■□□□□ 0.69
LIMS1-202ENST00000338045 BACH2Q9BYV9 841 aa19.35■□□□□ 0.69
LIMS1-202ENST00000338045 ANKRD13DQ6ZTN6 518 aa19.34■□□□□ 0.69
LIMS1-202ENST00000338045 CHD1LQ86WJ1 897 aa19.34■□□□□ 0.69
LIMS1-202ENST00000338045 HMMRO75330 724 aa19.33■□□□□ 0.69
LIMS1-202ENST00000338045 PIP4K2AP48426 406 aaPredicted RBP19.33■□□□□ 0.69
LIMS1-202ENST00000338045 RIC3Q7Z5B4 369 aa19.33■□□□□ 0.69
LIMS1-202ENST00000338045 THSD7AQ9UPZ6 1657 aa19.33■□□□□ 0.68
LIMS1-202ENST00000338045 A1BGP04217 495 aa19.33■□□□□ 0.68
LIMS1-202ENST00000338045 METTL22Q9BUU2 404 aaPredicted RBP19.33■□□□□ 0.68
LIMS1-202ENST00000338045 LRRFIP2Q9Y608 721 aaKnown RBP19.33■□□□□ 0.68
LIMS1-202ENST00000338045 NBPF7P0C2Y1 421 aaPredicted RBP19.32■□□□□ 0.68
LIMS1-202ENST00000338045 ATP8B2P98198 1209 aa19.32■□□□□ 0.68
LIMS1-202ENST00000338045 MEX3CQ5U5Q3 659 aaKnown RBP19.32■□□□□ 0.68
LIMS1-202ENST00000338045 SYTL4Q96C24 671 aaPredicted RBP19.32■□□□□ 0.68
LIMS1-202ENST00000338045 UTYO14607 1347 aa19.32■□□□□ 0.68
LIMS1-202ENST00000338045 PLBD2Q8NHP8 589 aa19.31■□□□□ 0.68
LIMS1-202ENST00000338045 SLC4A9Q96Q91 983 aa19.31■□□□□ 0.68
LIMS1-202ENST00000338045 IGKV5-2P06315 115 aa19.31■□□□□ 0.68
LIMS1-202ENST00000338045 CWF19L2Q2TBE0 894 aaKnown RBP19.31■□□□□ 0.68
LIMS1-202ENST00000338045 FAM161AQ3B820 660 aa19.31■□□□□ 0.68
LIMS1-202ENST00000338045 ANKRD45Q5TZF3 282 aa19.31■□□□□ 0.68
LIMS1-202ENST00000338045 DNAJC10Q8IXB1 793 aa19.31■□□□□ 0.68
LIMS1-202ENST00000338045 AFF2P51816 1311 aa19.3■□□□□ 0.68
LIMS1-202ENST00000338045 RBM42Q9BTD8 480 aaKnown RBP19.3■□□□□ 0.68
LIMS1-202ENST00000338045 LNPKQ9C0E8 428 aa19.3■□□□□ 0.68
LIMS1-202ENST00000338045 ARFGEF2Q9Y6D5 1785 aa19.29■□□□□ 0.68
LIMS1-202ENST00000338045 ATRNO75882 1429 aa19.29■□□□□ 0.68
LIMS1-202ENST00000338045 STARD3NLO95772 234 aa19.29■□□□□ 0.68
LIMS1-202ENST00000338045 NEXNQ0ZGT2 675 aa19.29■□□□□ 0.68
LIMS1-202ENST00000338045 C8orf34Q49A92 452 aa19.29■□□□□ 0.68
LIMS1-202ENST00000338045 KAT6BQ8WYB5 2073 aa19.29■□□□□ 0.68
LIMS1-202ENST00000338045 PNMA6EA0A0J9YXQ4 647 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms