RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 IBTKQ9P2D0 1353 aaPredicted RBP18.95■□□□□ 0.62
CCDC88C-202ENST00000334448 PDIA6Q15084 440 aa18.95■□□□□ 0.62
CCDC88C-202ENST00000334448 CCDC136Q96JN2 1154 aa18.95■□□□□ 0.62
CCDC88C-202ENST00000334448 HYPKQ9NX55 129 aa18.95■□□□□ 0.62
CCDC88C-202ENST00000334448 PRAMEF22A3QJZ6 481 aa18.94■□□□□ 0.62
CCDC88C-202ENST00000334448 EIF2S2P20042 333 aaKnown RBP18.94■□□□□ 0.62
CCDC88C-202ENST00000334448 N4BP2Q86UW6 1770 aaPredicted RBP18.93■□□□□ 0.62
CCDC88C-202ENST00000334448 PRIM1P49642 420 aaKnown RBP18.93■□□□□ 0.62
CCDC88C-202ENST00000334448 ZNF772Q68DY9 489 aaPredicted RBP18.93■□□□□ 0.62
CCDC88C-202ENST00000334448 B4GALNT3Q6L9W6 998 aa18.93■□□□□ 0.62
CCDC88C-202ENST00000334448 LRP10Q7Z4F1 713 aa18.93■□□□□ 0.62
CCDC88C-202ENST00000334448 ITPRIPQ8IWB1 547 aa18.93■□□□□ 0.62
CCDC88C-202ENST00000334448 TEX13AQ9BXU3 409 aaPredicted RBP18.93■□□□□ 0.62
CCDC88C-202ENST00000334448 QTRT2Q9H974 415 aaKnown RBP18.93■□□□□ 0.62
CCDC88C-202ENST00000334448 ZBTB40Q9NUA8 1239 aa18.93■□□□□ 0.62
CCDC88C-202ENST00000334448 CCT4P50991 539 aaKnown RBP18.92■□□□□ 0.62
CCDC88C-202ENST00000334448 ASAP1Q9ULH1 1129 aa18.92■□□□□ 0.62
CCDC88C-202ENST00000334448 ATP10DQ9P241 1426 aa18.91■□□□□ 0.62
CCDC88C-202ENST00000334448 ZBTB7BO15156 539 aaPredicted RBP18.91■□□□□ 0.62
CCDC88C-202ENST00000334448 FKBP5Q13451 457 aaPredicted RBP18.91■□□□□ 0.62
CCDC88C-202ENST00000334448 NECTIN2Q92692 538 aa18.91■□□□□ 0.62
CCDC88C-202ENST00000334448 USP16Q9Y5T5 823 aa18.91■□□□□ 0.62
CCDC88C-202ENST00000334448 ZNF831Q5JPB2 1677 aa18.9■□□□□ 0.62
CCDC88C-202ENST00000334448 KDM2BQ8NHM5 1336 aa18.9■□□□□ 0.62
CCDC88C-202ENST00000334448 NHSQ6T4R5 1651 aa18.89■□□□□ 0.61
CCDC88C-202ENST00000334448 PROSER3Q2NL68 480 aa18.89■□□□□ 0.61
CCDC88C-202ENST00000334448 SEPT12Q8IYM1 358 aa18.89■□□□□ 0.61
CCDC88C-202ENST00000334448 PHAXQ9H814 394 aaKnown RBP18.89■□□□□ 0.61
CCDC88C-202ENST00000334448 ADCY9O60503 1353 aa18.89■□□□□ 0.61
CCDC88C-202ENST00000334448 SMARCC1Q92922 1105 aaPredicted RBP18.88■□□□□ 0.61
CCDC88C-202ENST00000334448 PTCD1O75127 700 aaKnown RBP18.87■□□□□ 0.61
CCDC88C-202ENST00000334448 RBM6P78332 1123 aaKnown RBP18.87■□□□□ 0.61
CCDC88C-202ENST00000334448 DDX58O95786 925 aaKnown RBP18.86■□□□□ 0.61
CCDC88C-202ENST00000334448 KSR2Q6VAB6 950 aa18.86■□□□□ 0.61
CCDC88C-202ENST00000334448 CENPQQ7L2Z9 268 aaPredicted RBP18.86■□□□□ 0.61
CCDC88C-202ENST00000334448 SLC4A9Q96Q91 983 aa18.86■□□□□ 0.61
CCDC88C-202ENST00000334448 TJP1Q07157 1748 aa18.86■□□□□ 0.61
CCDC88C-202ENST00000334448 NBPF26B4DH59 902 aa18.85■□□□□ 0.61
CCDC88C-202ENST00000334448 F6X3S4 739 aa18.85■□□□□ 0.61
CCDC88C-202ENST00000334448 NBPF14Q5TI25 921 aa18.85■□□□□ 0.61
CCDC88C-202ENST00000334448 NBPF10Q6P3W6 841 aaKnown RBP18.85■□□□□ 0.61
CCDC88C-202ENST00000334448 NBPF15Q8N660 670 aa18.85■□□□□ 0.61
CCDC88C-202ENST00000334448 DNAAF4Q8WXU2 420 aa18.85■□□□□ 0.61
CCDC88C-202ENST00000334448 SYTL4Q96C24 671 aaPredicted RBP18.85■□□□□ 0.61
CCDC88C-202ENST00000334448 PCDHB15Q9Y5E8 787 aa18.85■□□□□ 0.61
CCDC88C-202ENST00000334448 PALLDQ8WX93 1383 aa18.84■□□□□ 0.61
CCDC88C-202ENST00000334448 A0A0G2JS52 829 aa18.84■□□□□ 0.61
CCDC88C-202ENST00000334448 PI4KAP2A4QPH2 592 aa18.84■□□□□ 0.61
CCDC88C-202ENST00000334448 STARD3NLO95772 234 aa18.84■□□□□ 0.61
CCDC88C-202ENST00000334448 ANXA1P04083 346 aa18.84■□□□□ 0.61
CCDC88C-202ENST00000334448 MYT1Q01538 1121 aa18.84■□□□□ 0.61
CCDC88C-202ENST00000334448 HDAC1Q13547 482 aaPredicted RBP18.84■□□□□ 0.61
CCDC88C-202ENST00000334448 PI4KAP1Q8N8J0 262 aa18.84■□□□□ 0.61
CCDC88C-202ENST00000334448 BEND3Q5T5X7 828 aa18.83■□□□□ 0.6
CCDC88C-202ENST00000334448 DNAJC10Q8IXB1 793 aa18.83■□□□□ 0.6
CCDC88C-202ENST00000334448 ACSBG1Q96GR2 724 aa18.83■□□□□ 0.6
CCDC88C-202ENST00000334448 RREB1Q92766 1687 aa18.82■□□□□ 0.6
CCDC88C-202ENST00000334448 ALDH1L1O75891 902 aa18.82■□□□□ 0.6
CCDC88C-202ENST00000334448 CYP19A1P11511 503 aaPredicted RBP18.82■□□□□ 0.6
CCDC88C-202ENST00000334448 XAGE3Q8WTP9 111 aa18.82■□□□□ 0.6
CCDC88C-202ENST00000334448 LOC102724428A0A0B4J2F2 783 aa18.81■□□□□ 0.6
CCDC88C-202ENST00000334448 KCNQ2O43526 872 aa18.81■□□□□ 0.6
CCDC88C-202ENST00000334448 SIK1P57059 783 aa18.81■□□□□ 0.6
CCDC88C-202ENST00000334448 RBM42Q9BTD8 480 aaKnown RBP18.81■□□□□ 0.6
CCDC88C-202ENST00000334448 SRCIN1Q9C0H9 1055 aa18.81■□□□□ 0.6
CCDC88C-202ENST00000334448 SLC4A10Q6U841 1118 aa18.8■□□□□ 0.6
CCDC88C-202ENST00000334448 COPS6Q7L5N1 327 aa18.8■□□□□ 0.6
CCDC88C-202ENST00000334448 A1BGP04217 495 aa18.79■□□□□ 0.6
CCDC88C-202ENST00000334448 GNAI3P08754 354 aa18.79■□□□□ 0.6
CCDC88C-202ENST00000334448 MYL6BP14649 208 aa18.79■□□□□ 0.6
CCDC88C-202ENST00000334448 LINS1Q8NG48 757 aa18.79■□□□□ 0.6
CCDC88C-202ENST00000334448 PLBD2Q8NHP8 589 aa18.79■□□□□ 0.6
CCDC88C-202ENST00000334448 MEIS3Q99687 375 aa18.79■□□□□ 0.6
CCDC88C-202ENST00000334448 RWDD1Q9H446 243 aaPredicted RBP18.79■□□□□ 0.6
CCDC88C-202ENST00000334448 MAP3K2Q9Y2U5 619 aa18.79■□□□□ 0.6
CCDC88C-202ENST00000334448 FAM196AQ6ZSG2 479 aa18.78■□□□□ 0.6
CCDC88C-202ENST00000334448 ANKRD13DQ6ZTN6 518 aa18.78■□□□□ 0.6
CCDC88C-202ENST00000334448 KRT27Q7Z3Y8 459 aa18.78■□□□□ 0.6
CCDC88C-202ENST00000334448 METTL22Q9BUU2 404 aaPredicted RBP18.78■□□□□ 0.6
CCDC88C-202ENST00000334448 BTAF1O14981 1849 aa18.77■□□□□ 0.6
CCDC88C-202ENST00000334448 SBF2Q86WG5 1849 aa18.77■□□□□ 0.6
CCDC88C-202ENST00000334448 IGHDP01880 384 aa18.77■□□□□ 0.6
CCDC88C-202ENST00000334448 PELP1Q8IZL8 1130 aaKnown RBP18.77■□□□□ 0.6
CCDC88C-202ENST00000334448 BCL11BQ9C0K0 894 aaPredicted RBP18.77■□□□□ 0.6
CCDC88C-202ENST00000334448 UTYO14607 1347 aa18.76■□□□□ 0.59
CCDC88C-202ENST00000334448 IL6STP40189 918 aaPredicted RBP18.76■□□□□ 0.59
CCDC88C-202ENST00000334448 RPAP2Q8IXW5 612 aaPredicted RBP18.76■□□□□ 0.59
CCDC88C-202ENST00000334448 USP44Q9H0E7 712 aa18.76■□□□□ 0.59
CCDC88C-202ENST00000334448 COL5A3P25940 1745 aaPredicted RBP18.75■□□□□ 0.59
CCDC88C-202ENST00000334448 NUP188Q5SRE5 1749 aa18.75■□□□□ 0.59
CCDC88C-202ENST00000334448 ITPK1Q13572 414 aa18.75■□□□□ 0.59
CCDC88C-202ENST00000334448 RIC3Q7Z5B4 369 aa18.75■□□□□ 0.59
CCDC88C-202ENST00000334448 ANKRD44Q8N8A2 993 aa18.75■□□□□ 0.59
CCDC88C-202ENST00000334448 RGS17Q9UGC6 210 aaPredicted RBP18.75■□□□□ 0.59
CCDC88C-202ENST00000334448 COL15A1P39059 1388 aa18.74■□□□□ 0.59
CCDC88C-202ENST00000334448 GNAI2P04899 355 aa18.74■□□□□ 0.59
CCDC88C-202ENST00000334448 RXRBP28702 533 aa18.74■□□□□ 0.59
CCDC88C-202ENST00000334448 ATP6V1AP38606 617 aa18.74■□□□□ 0.59
CCDC88C-202ENST00000334448 NEXNQ0ZGT2 675 aa18.74■□□□□ 0.59
CCDC88C-202ENST00000334448 AIMP1Q12904 312 aaKnown RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms