RNA–Protein interactions for RNA: ENST00000334136.9

HDAC6-201, Transcript of histone deacetylase 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC6, Length 4,190 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-201ENST00000334136 SPINK5Q9NQ38 1064 aaPredicted RBP14.4□□□□□ -0.1
HDAC6-201ENST00000334136 APBA3O96018 575 aa14.4□□□□□ -0.1
HDAC6-201ENST00000334136 HSP90AB3PQ58FF7 597 aa14.4□□□□□ -0.1
HDAC6-201ENST00000334136 FAM196AQ6ZSG2 479 aa14.4□□□□□ -0.1
HDAC6-201ENST00000334136 ZNF496Q96IT1 587 aaPredicted RBP14.4□□□□□ -0.1
HDAC6-201ENST00000334136 CD163L1Q9NR16 1453 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 PI4KAP2A4QPH2 592 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 AAMPQ13685 434 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 COPS6Q7L5N1 327 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 PI4KAP1Q8N8J0 262 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 CRB1P82279 1406 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 VAMP4O75379 141 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 NCBP3Q53F19 620 aaKnown RBP14.39□□□□□ -0.11
HDAC6-201ENST00000334136 FBXO41Q8TF61 875 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 C22orf23Q9BZE7 217 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 KCNJ4P48050 445 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 VPS72Q15906 364 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 ANKRD13DQ6ZTN6 518 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 XAGE3Q8WTP9 111 aa14.39□□□□□ -0.11
HDAC6-201ENST00000334136 LNPKQ9C0E8 428 aa14.38□□□□□ -0.11
HDAC6-201ENST00000334136 A0A087WZG4 1122 aa14.38□□□□□ -0.11
HDAC6-201ENST00000334136 GPTP24298 496 aa14.38□□□□□ -0.11
HDAC6-201ENST00000334136 TMEM57Q8N5G2 664 aa14.38□□□□□ -0.11
HDAC6-201ENST00000334136 C1orf115Q9H7X2 142 aa14.38□□□□□ -0.11
HDAC6-201ENST00000334136 CHD2O14647 1828 aaKnown RBP14.38□□□□□ -0.11
HDAC6-201ENST00000334136 CYP27B1O15528 508 aa14.38□□□□□ -0.11
HDAC6-201ENST00000334136 CHAF1AQ13111 956 aaPredicted RBP14.38□□□□□ -0.11
HDAC6-201ENST00000334136 MVPQ14764 893 aaKnown RBP14.38□□□□□ -0.11
HDAC6-201ENST00000334136 KIAA2012Q0VF49 1180 aa14.37□□□□□ -0.11
HDAC6-201ENST00000334136 FAM13BQ9NYF5 915 aa14.37□□□□□ -0.11
HDAC6-201ENST00000334136 TFCP2L1Q9NZI6 479 aa14.37□□□□□ -0.11
HDAC6-201ENST00000334136 RTCBQ9Y3I0 505 aaKnown RBP14.37□□□□□ -0.11
HDAC6-201ENST00000334136 PTPRCP08575 1304 aa14.37□□□□□ -0.11
HDAC6-201ENST00000334136 HSP90AB4PQ58FF6 505 aa14.37□□□□□ -0.11
HDAC6-201ENST00000334136 DNAJC10Q8IXB1 793 aa14.37□□□□□ -0.11
HDAC6-201ENST00000334136 MAP3K2Q9Y2U5 619 aa14.37□□□□□ -0.11
HDAC6-201ENST00000334136 GOLGA6L4A6NEF3 574 aa14.37□□□□□ -0.11
HDAC6-201ENST00000334136 TRAK2O60296 914 aa14.37□□□□□ -0.11
HDAC6-201ENST00000334136 CPDO75976 1380 aa14.36□□□□□ -0.11
HDAC6-201ENST00000334136 PTMSP20962 102 aa14.36□□□□□ -0.11
HDAC6-201ENST00000334136 TRIM37O94972 964 aa14.36□□□□□ -0.11
HDAC6-201ENST00000334136 TBC1D2BQ9UPU7 963 aa14.36□□□□□ -0.11
HDAC6-201ENST00000334136 KNDC1Q76NI1 1749 aa14.36□□□□□ -0.11
HDAC6-201ENST00000334136 ATP5J2-PTCD1G3V325 749 aa14.36□□□□□ -0.11
HDAC6-201ENST00000334136 KCNQ3O43525 872 aa14.36□□□□□ -0.11
HDAC6-201ENST00000334136 SURF6O75683 361 aaKnown RBP14.36□□□□□ -0.11
HDAC6-201ENST00000334136 BAG6P46379 1132 aa14.36□□□□□ -0.11
HDAC6-201ENST00000334136 ZRSR1Q15695 479 aaKnown RBP14.36□□□□□ -0.11
HDAC6-201ENST00000334136 DRC7Q8IY82 874 aa14.36□□□□□ -0.11
HDAC6-201ENST00000334136 NBPF14Q5TI25 921 aa14.35□□□□□ -0.11
HDAC6-201ENST00000334136 FAM43AQ8N2R8 423 aa14.35□□□□□ -0.11
HDAC6-201ENST00000334136 TRMT112Q9UI30 125 aaKnown RBP14.35□□□□□ -0.11
HDAC6-201ENST00000334136 EIF4A1P60842 406 aaKnown RBP14.35□□□□□ -0.11
HDAC6-201ENST00000334136 DDX21Q9NR30 783 aaKnown RBP eCLIP14.35□□□□□ -0.11
HDAC6-201ENST00000334136 TRIM27P14373 513 aa14.35□□□□□ -0.11
HDAC6-201ENST00000334136 MCCP23508 829 aa14.35□□□□□ -0.11
HDAC6-201ENST00000334136 ASAP1Q9ULH1 1129 aa14.35□□□□□ -0.11
HDAC6-201ENST00000334136 XRN1Q8IZH2 1706 aaKnown RBP14.34□□□□□ -0.11
HDAC6-201ENST00000334136 GNPATO15228 680 aa14.34□□□□□ -0.11
HDAC6-201ENST00000334136 SOS1Q07889 1333 aaPredicted RBP14.34□□□□□ -0.11
HDAC6-201ENST00000334136 TRIM6-TRIM34B2RNG4 842 aa14.34□□□□□ -0.11
HDAC6-201ENST00000334136 A1BGP04217 495 aa14.34□□□□□ -0.11
HDAC6-201ENST00000334136 HOXB7P09629 217 aa14.34□□□□□ -0.11
HDAC6-201ENST00000334136 SPATA31A1Q5TZJ5 1347 aa14.34□□□□□ -0.11
HDAC6-201ENST00000334136 DZIP3Q86Y13 1208 aaKnown RBP14.34□□□□□ -0.11
HDAC6-201ENST00000334136 CCDC85AQ96PX6 553 aaPredicted RBP14.34□□□□□ -0.11
HDAC6-201ENST00000334136 SSH2Q76I76 1423 aa14.34□□□□□ -0.11
HDAC6-201ENST00000334136 ADGRB2O60241 1585 aa14.33□□□□□ -0.11
HDAC6-201ENST00000334136 CCDC57Q2TAC2 916 aa14.33□□□□□ -0.12
HDAC6-201ENST00000334136 PDZRN3Q9UPQ7 1066 aa14.33□□□□□ -0.12
HDAC6-201ENST00000334136 IFIT2P09913 472 aaKnown RBP14.33□□□□□ -0.12
HDAC6-201ENST00000334136 KIF1AQ12756 1690 aa14.33□□□□□ -0.12
HDAC6-201ENST00000334136 FGD1P98174 961 aa14.32□□□□□ -0.12
HDAC6-201ENST00000334136 VPS37DQ86XT2 251 aa14.32□□□□□ -0.12
HDAC6-201ENST00000334136 MRPL50Q8N5N7 158 aaKnown RBP14.32□□□□□ -0.12
HDAC6-201ENST00000334136 MRE11P49959 708 aa14.32□□□□□ -0.12
HDAC6-201ENST00000334136 KSR2Q6VAB6 950 aa14.32□□□□□ -0.12
HDAC6-201ENST00000334136 NEUROD6Q96NK8 337 aa14.32□□□□□ -0.12
HDAC6-201ENST00000334136 CNNM1Q9NRU3 951 aa14.32□□□□□ -0.12
HDAC6-201ENST00000334136 SPATA31A5Q5VU36 1347 aa14.32□□□□□ -0.12
HDAC6-201ENST00000334136 SPATA31A7Q8IWB4 1347 aa14.32□□□□□ -0.12
HDAC6-201ENST00000334136 LOC102724428A0A0B4J2F2 783 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 SRGAP3O43295 1099 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 SIK1P57059 783 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 CWC25Q9NXE8 425 aaPredicted RBP14.31□□□□□ -0.12
HDAC6-201ENST00000334136 NAP1L2Q9ULW6 460 aaPredicted RBP14.31□□□□□ -0.12
HDAC6-201ENST00000334136 GIGYF1O75420 1035 aaPredicted RBP14.31□□□□□ -0.12
HDAC6-201ENST00000334136 TRAPPC3LQ5T215 181 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 PIGBQ92521 554 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 ARHGAP45Q92619 1136 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 MPHOSPH8Q99549 860 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 STK32BQ9NY57 414 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 USP16Q9Y5T5 823 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 USP32Q8NFA0 1604 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 SKOR2Q2VWA4 1001 aaPredicted RBP14.31□□□□□ -0.12
HDAC6-201ENST00000334136 PHAXQ9H814 394 aaKnown RBP14.31□□□□□ -0.12
HDAC6-201ENST00000334136 CCDC87Q9NVE4 849 aa14.31□□□□□ -0.12
HDAC6-201ENST00000334136 FMN2Q9NZ56 1722 aa14.3□□□□□ -0.12
HDAC6-201ENST00000334136 PPP1R42Q7Z4L9 355 aa14.3□□□□□ -0.12
HDAC6-201ENST00000334136 SETDB2Q96T68 719 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms