RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TMEM87AQ8NBN3 555 aa16.11■□□□□ 0.17
CCDC88C-201ENST00000331194 ARHGEF28Q8N1W1 1705 aaKnown RBP16.11■□□□□ 0.17
CCDC88C-201ENST00000331194 AEBP1Q8IUX7 1158 aa16.11■□□□□ 0.17
CCDC88C-201ENST00000331194 FEZ1Q99689 392 aa16.11■□□□□ 0.17
CCDC88C-201ENST00000331194 PNMA6EA0A0J9YXQ4 647 aa16.1■□□□□ 0.17
CCDC88C-201ENST00000331194 F13A1P00488 732 aa16.1■□□□□ 0.17
CCDC88C-201ENST00000331194 AK2P54819 239 aa16.1■□□□□ 0.17
CCDC88C-201ENST00000331194 CKAP2LQ8IYA6 745 aa16.1■□□□□ 0.17
CCDC88C-201ENST00000331194 IL1RAPL2Q9NP60 686 aa16.1■□□□□ 0.17
CCDC88C-201ENST00000331194 TNNT1P13805 278 aa16.1■□□□□ 0.17
CCDC88C-201ENST00000331194 KCNJ4P48050 445 aa16.1■□□□□ 0.17
CCDC88C-201ENST00000331194 RASEFQ8IZ41 740 aa16.1■□□□□ 0.17
CCDC88C-201ENST00000331194 ST7Q9NRC1 585 aa16.1■□□□□ 0.17
CCDC88C-201ENST00000331194 RIMS2Q9UQ26 1411 aa16.1■□□□□ 0.17
CCDC88C-201ENST00000331194 ERICH4A6NGS2 130 aa16.09■□□□□ 0.17
CCDC88C-201ENST00000331194 RUFY3Q7L099 469 aa16.09■□□□□ 0.17
CCDC88C-201ENST00000331194 HMMRO75330 724 aa16.09■□□□□ 0.17
CCDC88C-201ENST00000331194 ANAPC15P60006 121 aa16.09■□□□□ 0.17
CCDC88C-201ENST00000331194 NME9Q86XW9 330 aa16.09■□□□□ 0.17
CCDC88C-201ENST00000331194 NUTM1Q86Y26 1132 aa16.08■□□□□ 0.17
CCDC88C-201ENST00000331194 DDX41Q9UJV9 622 aaKnown RBP16.08■□□□□ 0.17
CCDC88C-201ENST00000331194 KIF24Q5T7B8 1368 aa16.08■□□□□ 0.17
CCDC88C-201ENST00000331194 SALL3Q9BXA9 1300 aa16.08■□□□□ 0.16
CCDC88C-201ENST00000331194 NPHP1O15259 732 aa16.08■□□□□ 0.16
CCDC88C-201ENST00000331194 FERMT3Q86UX7 667 aa16.08■□□□□ 0.16
CCDC88C-201ENST00000331194 CCDC83Q8IWF9 413 aa16.08■□□□□ 0.16
CCDC88C-201ENST00000331194 LRRCC1Q9C099 1032 aa16.08■□□□□ 0.16
CCDC88C-201ENST00000331194 SLC52A1Q9NWF4 448 aa16.08■□□□□ 0.16
CCDC88C-201ENST00000331194 SMC3Q9UQE7 1217 aa16.08■□□□□ 0.16
CCDC88C-201ENST00000331194 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-201ENST00000331194 VPS37CA5D8V6 355 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-201ENST00000331194 LIG1P18858 919 aa16.07■□□□□ 0.16
CCDC88C-201ENST00000331194 NECTIN2Q92692 538 aa16.07■□□□□ 0.16
CCDC88C-201ENST00000331194 TRERF1Q96PN7 1200 aa16.07■□□□□ 0.16
CCDC88C-201ENST00000331194 GOLGA6L6A8MZA4 724 aa16.06■□□□□ 0.16
CCDC88C-201ENST00000331194 HSPA4P34932 840 aa16.06■□□□□ 0.16
CCDC88C-201ENST00000331194 ARID5BQ14865 1188 aa16.06■□□□□ 0.16
CCDC88C-201ENST00000331194 SNX14Q9Y5W7 946 aa16.06■□□□□ 0.16
CCDC88C-201ENST00000331194 DLG5Q8TDM6 1919 aa16.06■□□□□ 0.16
CCDC88C-201ENST00000331194 MAP2P11137 1827 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-201ENST00000331194 NCKAP5LQ9HCH0 1330 aa16.06■□□□□ 0.16
CCDC88C-201ENST00000331194 CCDC192P0DO97 292 aa16.06■□□□□ 0.16
CCDC88C-201ENST00000331194 KIF18AQ8NI77 898 aa16.06■□□□□ 0.16
CCDC88C-201ENST00000331194 MRVI1Q9Y6F6 885 aa16.06■□□□□ 0.16
CCDC88C-201ENST00000331194 GJB2P29033 226 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 IRX5P78411 483 aaPredicted RBP16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 TXNDC2Q86VQ3 553 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 SPG7Q9UQ90 795 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 YTHDC2Q9H6S0 1430 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 TPD52L1Q16890 204 aaPredicted RBP16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 CHMP4AQ9BY43 222 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 TRIM5Q9C035 493 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 RPGRIP1LQ68CZ1 1315 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 USP27XA6NNY8 438 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 SMTNL1A8MU46 457 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 CCDC112Q8NEF3 446 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 SLC26A8Q96RN1 970 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 MTMR6Q9Y217 621 aa16.05■□□□□ 0.16
CCDC88C-201ENST00000331194 TYRO3Q06418 890 aa16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 TERF2Q15554 542 aa16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 KMT5BQ4FZB7 885 aa16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 ANO6Q4KMQ2 910 aa16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 ZSCAN25Q6NSZ9 544 aa16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 NECAB1Q8N987 351 aa16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 CACTINQ8WUQ7 758 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 CCDC144BQ3MJ40 725 aa16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 CCDC144CPQ8IYA2 1237 aa16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 TTC14Q96N46 770 aa16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 CBX8Q9HC52 389 aa16.04■□□□□ 0.16
CCDC88C-201ENST00000331194 LMOD3Q0VAK6 560 aa16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 FAM200AQ8TCP9 573 aa16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 RTF1Q92541 710 aaKnown RBP16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 LMTK2Q8IWU2 1503 aa16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 GNAI2P04899 355 aa16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 SULT6B1Q6IMI4 303 aa16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 TTC6Q86TZ1 520 aa16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 RBM33Q96EV2 1170 aaKnown RBP16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 LIMCH1Q9UPQ0 1083 aa16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 MORC2Q9Y6X9 1032 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 TPM3P06753 285 aa16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 CASTP20810 708 aaKnown RBP16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 GABPB1Q06547 395 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 COL9A3Q14050 684 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 ZNF215Q9UL58 517 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 KIAA0232Q92628 1395 aa16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 ZFYVE9O95405 1425 aa16.03■□□□□ 0.16
CCDC88C-201ENST00000331194 CHL1O00533 1208 aa16.02■□□□□ 0.16
CCDC88C-201ENST00000331194 TFIP11Q9UBB9 837 aaKnown RBP16.02■□□□□ 0.16
CCDC88C-201ENST00000331194 CWC27Q6UX04 472 aaKnown RBP16.02■□□□□ 0.15
CCDC88C-201ENST00000331194 KIF13AQ9H1H9 1805 aa16.01■□□□□ 0.15
CCDC88C-201ENST00000331194 MAP3K11Q16584 847 aa16.01■□□□□ 0.15
CCDC88C-201ENST00000331194 ADCK5Q3MIX3 580 aa16.01■□□□□ 0.15
CCDC88C-201ENST00000331194 SYTL4Q96C24 671 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-201ENST00000331194 ANKRD26Q9UPS8 1709 aa16.01■□□□□ 0.15
CCDC88C-201ENST00000331194 PTPRCP08575 1304 aa16.01■□□□□ 0.15
CCDC88C-201ENST00000331194 TRMT1Q9NXH9 659 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-201ENST00000331194 DACT1Q9NYF0 836 aa16.01■□□□□ 0.15
CCDC88C-201ENST00000331194 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.01■□□□□ 0.15
CCDC88C-201ENST00000331194 CDC42BPGQ6DT37 1551 aa16■□□□□ 0.15
CCDC88C-201ENST00000331194 FOXO3O43524 673 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms