RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 USP48Q86UV5 1035 aa15.54■□□□□ 0.08
HMGCS1-201ENST00000325110 TCEANC2Q96MN5 208 aa15.54■□□□□ 0.08
HMGCS1-201ENST00000325110 CNPY2Q9Y2B0 182 aa15.54■□□□□ 0.08
HMGCS1-201ENST00000325110 TTC21AQ8NDW8 1320 aa15.53■□□□□ 0.08
HMGCS1-201ENST00000325110 ANKRD26Q9UPS8 1709 aa15.53■□□□□ 0.08
HMGCS1-201ENST00000325110 FERMT3Q86UX7 667 aa15.53■□□□□ 0.08
HMGCS1-201ENST00000325110 CRB1P82279 1406 aa15.53■□□□□ 0.08
HMGCS1-201ENST00000325110 CYP2E1P05181 493 aaPredicted RBP15.53■□□□□ 0.08
HMGCS1-201ENST00000325110 NAP1L2Q9ULW6 460 aaPredicted RBP15.53■□□□□ 0.08
HMGCS1-201ENST00000325110 ZNF830Q96NB3 372 aaPredicted RBP15.52■□□□□ 0.08
HMGCS1-201ENST00000325110 OSBPL3Q9H4L5 887 aa15.52■□□□□ 0.08
HMGCS1-201ENST00000325110 PHF14O94880 888 aa15.52■□□□□ 0.08
HMGCS1-201ENST00000325110 USP25Q9UHP3 1055 aa15.52■□□□□ 0.08
HMGCS1-201ENST00000325110 CDC42BPGQ6DT37 1551 aa15.52■□□□□ 0.07
HMGCS1-201ENST00000325110 AACSQ86V21 672 aa15.52■□□□□ 0.07
HMGCS1-201ENST00000325110 GPATCH3Q96I76 525 aa15.52■□□□□ 0.07
HMGCS1-201ENST00000325110 PPP1R9BQ96SB3 815 aa15.52■□□□□ 0.07
HMGCS1-201ENST00000325110 CCDC8Q9H0W5 538 aaPredicted RBP15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 ARHGEF10O15013 1369 aa15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 DLC1Q96QB1 1528 aa15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 BRD1O95696 1058 aa15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 AK2P54819 239 aa15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 FGD1P98174 961 aa15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 CWF19L2Q2TBE0 894 aaKnown RBP15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 IGSF1Q8N6C5 1336 aa15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 MAP3K5Q99683 1374 aa15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 IBTKQ9P2D0 1353 aaPredicted RBP15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 GOLGA6L4A6NEF3 574 aa15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 JARID2Q92833 1246 aaPredicted RBP15.51■□□□□ 0.07
HMGCS1-201ENST00000325110 NECAB1Q8N987 351 aa15.5■□□□□ 0.07
HMGCS1-201ENST00000325110 SIRT1Q96EB6 747 aa15.5■□□□□ 0.07
HMGCS1-201ENST00000325110 MYL6BP14649 208 aa15.5■□□□□ 0.07
HMGCS1-201ENST00000325110 KIAA2012Q0VF49 1180 aa15.5■□□□□ 0.07
HMGCS1-201ENST00000325110 STK3Q13188 491 aa15.5■□□□□ 0.07
HMGCS1-201ENST00000325110 HCLS1P14317 486 aaPredicted RBP15.5■□□□□ 0.07
HMGCS1-201ENST00000325110 FOSBP53539 338 aa15.5■□□□□ 0.07
HMGCS1-201ENST00000325110 RASEFQ8IZ41 740 aa15.5■□□□□ 0.07
HMGCS1-201ENST00000325110 RUFY2Q8WXA3 655 aa15.5■□□□□ 0.07
HMGCS1-201ENST00000325110 CCDC39Q9UFE4 941 aa15.5■□□□□ 0.07
HMGCS1-201ENST00000325110 ZKSCAN1P17029 563 aaPredicted RBP15.49■□□□□ 0.07
HMGCS1-201ENST00000325110 MAP3K2Q9Y2U5 619 aa15.49■□□□□ 0.07
HMGCS1-201ENST00000325110 ANAPC15P60006 121 aa15.49■□□□□ 0.07
HMGCS1-201ENST00000325110 G3BP1Q13283 466 aaKnown RBP eCLIP15.49■□□□□ 0.072e-8■■□□□ 13
HMGCS1-201ENST00000325110 CLEC17AQ6ZS10 378 aa15.49■□□□□ 0.07
HMGCS1-201ENST00000325110 UBE2Q2Q8WVN8 375 aa15.49■□□□□ 0.07
HMGCS1-201ENST00000325110 SETD1BQ9UPS6 1966 aaKnown RBP15.49■□□□□ 0.07
HMGCS1-201ENST00000325110 NBPF6Q5VWK0 638 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 THEMISQ8N1K5 641 aaPredicted RBP15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 NBPF4Q96M43 638 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 BOLA2Q9H3K6 86 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 DLG5Q8TDM6 1919 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 OVOS2A0A0J9YW53 1432 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 OVOS2Q6IE36 1432 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 RAB11FIP3O75154 756 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 TPM2P07951 284 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 HSP90AB4PQ58FF6 505 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 FSD1Q9BTV5 496 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 PHF8Q9UPP1 1060 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 SNX14Q9Y5W7 946 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 PDRG1Q9NUG6 133 aa15.48■□□□□ 0.07
HMGCS1-201ENST00000325110 UQCRHLA0A096LP55 91 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 STX6O43752 255 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 UQCRHP07919 91 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 RIC3Q7Z5B4 369 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 LIMCH1Q9UPQ0 1083 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 KNDC1Q76NI1 1749 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 GLRX3O76003 335 aaKnown RBP15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 PIP4K2AP48426 406 aaPredicted RBP15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 GIMAP6Q6P9H5 292 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 SPC24Q8NBT2 197 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 SGSM2O43147 1006 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 SSH3Q8TE77 659 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 CYP46A1Q9Y6A2 500 aa15.47■□□□□ 0.07
HMGCS1-201ENST00000325110 RRP9O43818 475 aaKnown RBP15.46■□□□□ 0.07
HMGCS1-201ENST00000325110 SYT1P21579 422 aa15.46■□□□□ 0.07
HMGCS1-201ENST00000325110 GJB2P29033 226 aa15.46■□□□□ 0.07
HMGCS1-201ENST00000325110 HSPA4P34932 840 aa15.46■□□□□ 0.07
HMGCS1-201ENST00000325110 KLHDC4Q8TBB5 520 aa15.46■□□□□ 0.07
HMGCS1-201ENST00000325110 ZKSCAN5Q9Y2L8 839 aa15.46■□□□□ 0.07
HMGCS1-201ENST00000325110 ATP6V1DQ9Y5K8 247 aa15.46■□□□□ 0.07
HMGCS1-201ENST00000325110 OFD1O75665 1012 aa15.46■□□□□ 0.06
HMGCS1-201ENST00000325110 HSP90B1P14625 803 aaKnown RBP15.46■□□□□ 0.06
HMGCS1-201ENST00000325110 PLEKHO1Q53GL0 409 aaPredicted RBP15.46■□□□□ 0.06
HMGCS1-201ENST00000325110 FAM173BQ6P4H8 233 aa15.46■□□□□ 0.06
HMGCS1-201ENST00000325110 PRAMEF22A3QJZ6 481 aa15.45■□□□□ 0.06
HMGCS1-201ENST00000325110 TRHP20396 242 aaPredicted RBP15.45■□□□□ 0.06
HMGCS1-201ENST00000325110 DNM1Q05193 864 aaKnown RBP15.45■□□□□ 0.06
HMGCS1-201ENST00000325110 INTS4Q96HW7 963 aaKnown RBP15.45■□□□□ 0.06
HMGCS1-201ENST00000325110 HTATSF1O43719 755 aaKnown RBP15.45■□□□□ 0.06
HMGCS1-201ENST00000325110 CSB-PGBD3P0DP91 1061 aa15.45■□□□□ 0.06
HMGCS1-201ENST00000325110 ZSCAN22P10073 491 aaPredicted RBP15.45■□□□□ 0.06
HMGCS1-201ENST00000325110 CAMK4Q16566 473 aa15.45■□□□□ 0.06
HMGCS1-201ENST00000325110 DRC7Q8IY82 874 aa15.45■□□□□ 0.06
HMGCS1-201ENST00000325110 ZC3H6P61129 1189 aaKnown RBP15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 CUL4AQ13619 759 aa15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 C17orf53Q8N3J3 647 aaPredicted RBP15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 TTC12Q9H892 705 aaPredicted RBP15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 ECHDC1Q9NTX5 307 aa15.44■□□□□ 0.06
HMGCS1-201ENST00000325110 RAD50Q92878 1312 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms