RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 PXDNLA1KZ92 1463 aa26.66■■□□□ 1.86
SHMT1-201ENST00000316694 MARF1Q9Y4F3 1742 aaKnown RBP26.66■■□□□ 1.86
SHMT1-201ENST00000316694 NWD1Q149M9 1564 aa26.66■■□□□ 1.86
SHMT1-201ENST00000316694 AOX1Q06278 1338 aa26.65■■□□□ 1.86
SHMT1-201ENST00000316694 UBE2Q2Q8WVN8 375 aa26.64■■□□□ 1.86
SHMT1-201ENST00000316694 BABAM1Q9NWV8 329 aa26.64■■□□□ 1.86
SHMT1-201ENST00000316694 ANKARQ7Z5J8 1434 aa26.64■■□□□ 1.85
SHMT1-201ENST00000316694 SRGAP3O43295 1099 aa26.63■■□□□ 1.85
SHMT1-201ENST00000316694 PDLIM2Q96JY6 352 aa26.63■■□□□ 1.85
SHMT1-201ENST00000316694 SETD1BQ9UPS6 1966 aaKnown RBP26.63■■□□□ 1.85
SHMT1-201ENST00000316694 RAB11FIP3O75154 756 aa26.63■■□□□ 1.85
SHMT1-201ENST00000316694 RHPN1Q8TCX5 695 aa26.63■■□□□ 1.85
SHMT1-201ENST00000316694 N4BP2Q86UW6 1770 aaPredicted RBP26.63■■□□□ 1.85
SHMT1-201ENST00000316694 HSPA4P34932 840 aa26.62■■□□□ 1.85
SHMT1-201ENST00000316694 RNF214Q8ND24 703 aa26.62■■□□□ 1.85
SHMT1-201ENST00000316694 NBPF7P0C2Y1 421 aaPredicted RBP26.61■■□□□ 1.85
SHMT1-201ENST00000316694 GDPD2Q9HCC8 539 aa26.61■■□□□ 1.85
SHMT1-201ENST00000316694 KIAA1211Q6ZU35 1233 aa26.61■■□□□ 1.85
SHMT1-201ENST00000316694 POLA2Q14181 598 aa26.6■■□□□ 1.85
SHMT1-201ENST00000316694 HS1BP3Q53T59 392 aa26.6■■□□□ 1.85
SHMT1-201ENST00000316694 PI4K2BQ8TCG2 481 aa26.6■■□□□ 1.85
SHMT1-201ENST00000316694 IL17RAQ96F46 866 aa26.6■■□□□ 1.85
SHMT1-201ENST00000316694 CHPF2Q9P2E5 772 aa26.59■■□□□ 1.85
SHMT1-201ENST00000316694 KIF1BPQ96EK5 621 aa26.59■■□□□ 1.85
SHMT1-201ENST00000316694 HSP90AA2PQ14568 343 aaPredicted RBP26.58■■□□□ 1.85
SHMT1-201ENST00000316694 NOL7Q9UMY1 257 aaKnown RBP26.58■■□□□ 1.85
SHMT1-201ENST00000316694 PHF8Q9UPP1 1060 aa26.58■■□□□ 1.85
SHMT1-201ENST00000316694 SGSM2O43147 1006 aa26.57■■□□□ 1.84
SHMT1-201ENST00000316694 OFD1O75665 1012 aa26.57■■□□□ 1.84
SHMT1-201ENST00000316694 LGR6Q9HBX8 967 aa26.57■■□□□ 1.84
SHMT1-201ENST00000316694 WDR33Q9C0J8 1336 aaKnown RBP26.57■■□□□ 1.84
SHMT1-201ENST00000316694 ZBTB7CA1YPR0 619 aa26.57■■□□□ 1.84
SHMT1-201ENST00000316694 PI4KAP2A4QPH2 592 aa26.57■■□□□ 1.84
SHMT1-201ENST00000316694 PI4KAP1Q8N8J0 262 aa26.57■■□□□ 1.84
SHMT1-201ENST00000316694 RAD50Q92878 1312 aa26.57■■□□□ 1.84
SHMT1-201ENST00000316694 GADD45BO75293 160 aaPredicted RBP26.56■■□□□ 1.84
SHMT1-201ENST00000316694 ANXA1P04083 346 aa26.56■■□□□ 1.84
SHMT1-201ENST00000316694 CNTROBQ8N137 903 aa26.56■■□□□ 1.84
SHMT1-201ENST00000316694 TPM2P07951 284 aa26.56■■□□□ 1.84
SHMT1-201ENST00000316694 EIF4A1P60842 406 aaKnown RBP26.56■■□□□ 1.84
SHMT1-201ENST00000316694 DNAAF4Q8WXU2 420 aa26.56■■□□□ 1.84
SHMT1-201ENST00000316694 SYAP1Q96A49 352 aaPredicted RBP26.56■■□□□ 1.84
SHMT1-201ENST00000316694 EPB41L2O43491 1005 aaKnown RBP26.55■■□□□ 1.84
SHMT1-201ENST00000316694 LARP6Q9BRS8 491 aaKnown RBP26.55■■□□□ 1.84
SHMT1-201ENST00000316694 SNX14Q9Y5W7 946 aa26.55■■□□□ 1.84
SHMT1-201ENST00000316694 OS9Q13438 667 aaPredicted RBP26.55■■□□□ 1.84
SHMT1-201ENST00000316694 NBPF6Q5VWK0 638 aa26.55■■□□□ 1.84
SHMT1-201ENST00000316694 CWC27Q6UX04 472 aaKnown RBP26.55■■□□□ 1.84
SHMT1-201ENST00000316694 USP48Q86UV5 1035 aa26.55■■□□□ 1.84
SHMT1-201ENST00000316694 NBPF4Q96M43 638 aa26.55■■□□□ 1.84
SHMT1-201ENST00000316694 TSPY26PQ9H489 355 aa26.55■■□□□ 1.84
SHMT1-201ENST00000316694 BEND3Q5T5X7 828 aa26.54■■□□□ 1.84
SHMT1-201ENST00000316694 PDZRN4Q6ZMN7 1036 aaPredicted RBP26.54■■□□□ 1.84
SHMT1-201ENST00000316694 EIF2AK3Q9NZJ5 1116 aaKnown RBP26.54■■□□□ 1.84
SHMT1-201ENST00000316694 KCNQ3O43525 872 aa26.54■■□□□ 1.84
SHMT1-201ENST00000316694 CEMIPQ8WUJ3 1361 aa26.54■■□□□ 1.84
SHMT1-201ENST00000316694 PLEKHG5O94827 1062 aa26.53■■□□□ 1.84
SHMT1-201ENST00000316694 LSG1Q9H089 658 aaKnown RBP26.53■■□□□ 1.84
SHMT1-201ENST00000316694 SPG7Q9UQ90 795 aa26.53■■□□□ 1.84
SHMT1-201ENST00000316694 LTN1O94822 1766 aa26.53■■□□□ 1.84
SHMT1-201ENST00000316694 RRP9O43818 475 aaKnown RBP26.53■■□□□ 1.84
SHMT1-201ENST00000316694 TPRNQ4KMQ1 711 aa26.53■■□□□ 1.84
SHMT1-201ENST00000316694 RASEFQ8IZ41 740 aa26.52■■□□□ 1.84
SHMT1-201ENST00000316694 TCHHQ07283 1943 aa26.52■■□□□ 1.84
SHMT1-201ENST00000316694 IP6K1Q92551 441 aa26.51■■□□□ 1.84
SHMT1-201ENST00000316694 AK2P54819 239 aa26.51■■□□□ 1.83
SHMT1-201ENST00000316694 XPCQ01831 940 aaPredicted RBP26.51■■□□□ 1.83
SHMT1-201ENST00000316694 RPAP1Q9BWH6 1393 aaPredicted RBP26.5■■□□□ 1.83
SHMT1-201ENST00000316694 ZKSCAN5Q9Y2L8 839 aa26.5■■□□□ 1.83
SHMT1-201ENST00000316694 TEFQ10587 303 aa26.49■■□□□ 1.83
SHMT1-201ENST00000316694 ESCO1Q5FWF5 840 aa26.49■■□□□ 1.83
SHMT1-201ENST00000316694 USP54Q70EL1 1684 aa26.49■■□□□ 1.83
SHMT1-201ENST00000316694 HSP90AB4PQ58FF6 505 aa26.49■■□□□ 1.83
SHMT1-201ENST00000316694 TTC14Q96N46 770 aa26.49■■□□□ 1.83
SHMT1-201ENST00000316694 CCDC39Q9UFE4 941 aa26.49■■□□□ 1.83
SHMT1-201ENST00000316694 BTBD11A6QL63 1104 aa26.48■■□□□ 1.83
SHMT1-201ENST00000316694 ZNF500O60304 480 aaPredicted RBP26.48■■□□□ 1.83
SHMT1-201ENST00000316694 PHF14O94880 888 aa26.48■■□□□ 1.83
SHMT1-201ENST00000316694 PSME1Q06323 249 aa26.48■■□□□ 1.83
SHMT1-201ENST00000316694 CPA1P15085 419 aa26.48■■□□□ 1.83
SHMT1-201ENST00000316694 RUFY3Q7L099 469 aa26.48■■□□□ 1.83
SHMT1-201ENST00000316694 LRRC59Q96AG4 307 aaKnown RBP26.48■■□□□ 1.83
SHMT1-201ENST00000316694 DIAPH3Q9NSV4 1193 aa26.48■■□□□ 1.83
SHMT1-201ENST00000316694 HOXB7P09629 217 aa26.47■■□□□ 1.83
SHMT1-201ENST00000316694 LIMCH1Q9UPQ0 1083 aa26.47■■□□□ 1.83
SHMT1-201ENST00000316694 CNPY2Q9Y2B0 182 aa26.47■■□□□ 1.83
SHMT1-201ENST00000316694 MPRIPQ6WCQ1 1025 aa26.47■■□□□ 1.83
SHMT1-201ENST00000316694 R3HCC1Q9Y3T6 440 aaKnown RBP26.47■■□□□ 1.83
SHMT1-201ENST00000316694 ADCY9O60503 1353 aa26.46■■□□□ 1.83
SHMT1-201ENST00000316694 GLRX3O76003 335 aaKnown RBP26.46■■□□□ 1.83
SHMT1-201ENST00000316694 CASTP20810 708 aaKnown RBP26.46■■□□□ 1.83
SHMT1-201ENST00000316694 ZNF530Q6P9A1 599 aaPredicted RBP26.46■■□□□ 1.83
SHMT1-201ENST00000316694 ZSCAN22P10073 491 aaPredicted RBP26.45■■□□□ 1.83
SHMT1-201ENST00000316694 PTMAP06454 111 aaKnown RBP26.45■■□□□ 1.82
SHMT1-201ENST00000316694 ANKLE2Q86XL3 938 aa26.45■■□□□ 1.82
SHMT1-201ENST00000316694 CLASRPQ8N2M8 674 aaKnown RBP26.45■■□□□ 1.82
SHMT1-201ENST00000316694 TTC41PQ6P2S7 1318 aa26.45■■□□□ 1.82
SHMT1-201ENST00000316694 CHMP4AQ9BY43 222 aa26.44■■□□□ 1.82
SHMT1-201ENST00000316694 C9orf78Q9NZ63 289 aaPredicted RBP26.44■■□□□ 1.82
SHMT1-201ENST00000316694 SMC3Q9UQE7 1217 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms