RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 CGNQ9P2M7 1197 aaKnown RBP9.67□□□□□ -0.86
VPS41-202ENST00000310301 ADGBQ8N7X0 1667 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 ERC2O15083 957 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 PAXIP1Q6ZW49 1069 aaPredicted RBP9.66□□□□□ -0.86
VPS41-202ENST00000310301 TCEAL9Q9UHQ7 104 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 SERPINC1P01008 464 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 MCM4P33991 863 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 DYDC1Q8WWB3 177 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 CCDC102AQ96A19 550 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 ZHX1Q9UKY1 873 aaPredicted RBP9.66□□□□□ -0.86
VPS41-202ENST00000310301 RAD21O60216 631 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 PSMA5P28066 241 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 GPR162Q16538 588 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 ZFYVE27Q5T4F4 411 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 BRINP3Q76B58 766 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 ZNF622Q969S3 477 aaKnown RBP eCLIP9.66□□□□□ -0.861e-6■■■□□ 15.3
VPS41-202ENST00000310301 DHX16O60231 1041 aaKnown RBP9.66□□□□□ -0.86
VPS41-202ENST00000310301 MCM2P49736 904 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 TRAPPC3LQ5T215 181 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 TNMDQ9H2S6 317 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 CNNM1Q9NRU3 951 aa9.66□□□□□ -0.86
VPS41-202ENST00000310301 KDM4AO75164 1064 aa9.65□□□□□ -0.86
VPS41-202ENST00000310301 CEBPZQ03701 1054 aaKnown RBP9.65□□□□□ -0.86
VPS41-202ENST00000310301 THRAP3Q9Y2W1 955 aaKnown RBP9.65□□□□□ -0.86
VPS41-202ENST00000310301 PTPRTO14522 1441 aa9.65□□□□□ -0.86
VPS41-202ENST00000310301 ERLIN2O94905 339 aa9.65□□□□□ -0.86
VPS41-202ENST00000310301 DHX8Q14562 1220 aaKnown RBP9.65□□□□□ -0.86
VPS41-202ENST00000310301 TRERF1Q96PN7 1200 aa9.65□□□□□ -0.86
VPS41-202ENST00000310301 NFE2L2Q16236 605 aa9.65□□□□□ -0.87
VPS41-202ENST00000310301 GPATCH11Q8N954 259 aa9.65□□□□□ -0.87
VPS41-202ENST00000310301 DCAF5Q96JK2 942 aa9.65□□□□□ -0.87
VPS41-202ENST00000310301 INCENPQ9NQS7 918 aa9.65□□□□□ -0.87
VPS41-202ENST00000310301 K7ELQ4 463 aaPredicted RBP9.64□□□□□ -0.87
VPS41-202ENST00000310301 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.64□□□□□ -0.872e-6■■■■■ 93.9
VPS41-202ENST00000310301 EMILIN1Q9Y6C2 1016 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 SETDB2Q96T68 719 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 LRRCC1Q9C099 1032 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 NEFHP12036 1026 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 MYL6BP14649 208 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 CCDC87Q9NVE4 849 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 CALCOCO1Q9P1Z2 691 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 GNAI3P08754 354 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 RALYLQ86SE5 291 aaKnown RBP9.64□□□□□ -0.87
VPS41-202ENST00000310301 NYXQ9GZU5 481 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 CCDC181Q5TID7 509 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 SEPT12Q8IYM1 358 aa9.64□□□□□ -0.87
VPS41-202ENST00000310301 MAGEC2Q9UBF1 373 aaPredicted RBP9.64□□□□□ -0.87
VPS41-202ENST00000310301 IBSPP21815 317 aaPredicted RBP9.63□□□□□ -0.87
VPS41-202ENST00000310301 NBPF6Q5VWK0 638 aa9.63□□□□□ -0.87
VPS41-202ENST00000310301 NBPF5PQ86XG9 351 aaPredicted RBP9.63□□□□□ -0.87
VPS41-202ENST00000310301 NBPF4Q96M43 638 aa9.63□□□□□ -0.87
VPS41-202ENST00000310301 SNRPA1P09661 255 aaKnown RBP9.63□□□□□ -0.87
VPS41-202ENST00000310301 UBTFL1P0CB47 393 aaPredicted RBP9.63□□□□□ -0.87
VPS41-202ENST00000310301 PDCP20941 246 aa9.63□□□□□ -0.87
VPS41-202ENST00000310301 ENOX2Q16206 610 aaKnown RBP9.63□□□□□ -0.87
VPS41-202ENST00000310301 PPFIBP1Q86W92 1011 aa9.63□□□□□ -0.87
VPS41-202ENST00000310301 ZNF396Q96N95 335 aaPredicted RBP9.63□□□□□ -0.87
VPS41-202ENST00000310301 CCDC57Q2TAC2 916 aa9.63□□□□□ -0.87
VPS41-202ENST00000310301 CNTROBQ8N137 903 aa9.63□□□□□ -0.87
VPS41-202ENST00000310301 CDCA7LQ96GN5 454 aa9.63□□□□□ -0.87
VPS41-202ENST00000310301 AKAP4Q5JQC9 854 aa9.63□□□□□ -0.87
VPS41-202ENST00000310301 TMCO3Q6UWJ1 677 aa9.63□□□□□ -0.87
VPS41-202ENST00000310301 DDX46Q7L014 1031 aaKnown RBP9.63□□□□□ -0.87
VPS41-202ENST00000310301 DDX17Q92841 729 aaKnown RBP9.63□□□□□ -0.87
VPS41-202ENST00000310301 BRMS1Q9HCU9 246 aa9.63□□□□□ -0.87
VPS41-202ENST00000310301 COL17A1Q9UMD9 1497 aaPredicted RBP9.62□□□□□ -0.87
VPS41-202ENST00000310301 TAX1BP1Q86VP1 789 aa9.62□□□□□ -0.87
VPS41-202ENST00000310301 JDP2Q8WYK2 163 aa9.62□□□□□ -0.87
VPS41-202ENST00000310301 UBXN4Q92575 508 aa9.62□□□□□ -0.87
VPS41-202ENST00000310301 ZNHIT6Q9NWK9 470 aaKnown RBP9.62□□□□□ -0.87
VPS41-202ENST00000310301 PRAG1Q86YV5 1406 aa9.62□□□□□ -0.87
VPS41-202ENST00000310301 STK38Q15208 465 aa9.62□□□□□ -0.87
VPS41-202ENST00000310301 RBM5P52756 815 aaKnown RBP eCLIP9.61□□□□□ -0.87
VPS41-202ENST00000310301 LARP1Q6PKG0 1096 aaKnown RBP9.61□□□□□ -0.87
VPS41-202ENST00000310301 TBC1D2BQ9UPU7 963 aa9.61□□□□□ -0.87
VPS41-202ENST00000310301 WDR33Q9C0J8 1336 aaKnown RBP9.61□□□□□ -0.87
VPS41-202ENST00000310301 RIMS1Q86UR5 1692 aaKnown RBP9.61□□□□□ -0.87
VPS41-202ENST00000310301 FAM135BQ49AJ0 1406 aa9.61□□□□□ -0.87
VPS41-202ENST00000310301 ANKRD62A6NC57 917 aa9.61□□□□□ -0.87
VPS41-202ENST00000310301 TPTE2Q6XPS3 522 aa9.61□□□□□ -0.87
VPS41-202ENST00000310301 SEPT7Q16181 437 aaKnown RBP9.61□□□□□ -0.87
VPS41-202ENST00000310301 TICAM2Q86XR7 235 aa9.61□□□□□ -0.87
VPS41-202ENST00000310301 CCDC125Q86Z20 511 aa9.61□□□□□ -0.87
VPS41-202ENST00000310301 LMOD1P29536 600 aaPredicted RBP9.61□□□□□ -0.87
VPS41-202ENST00000310301 TWISTNBQ3B726 338 aaPredicted RBP9.61□□□□□ -0.87
VPS41-202ENST00000310301 CCDC43Q96MW1 224 aaKnown RBP9.61□□□□□ -0.87
VPS41-202ENST00000310301 SHTN1A0MZ66 631 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 CBFA2T2O43439 604 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 XBP1P17861 261 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 ATP2B1P20020 1258 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 CLEC11AQ9Y240 323 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 ADGRL3Q9HAR2 1447 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 CAMSAP1Q5T5Y3 1602 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 MAP3K4Q9Y6R4 1608 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 EDC4Q6P2E9 1401 aaKnown RBP9.6□□□□□ -0.87
VPS41-202ENST00000310301 GNPATO15228 680 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 WASHC4Q2M389 1173 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 FILIP1Q7Z7B0 1213 aa9.6□□□□□ -0.87
VPS41-202ENST00000310301 IPO4Q8TEX9 1081 aaKnown RBP9.6□□□□□ -0.87
VPS41-202ENST00000310301 HYPKQ9NX55 129 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms