RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 FCHSD2O94868 740 aa26.04■■□□□ 1.76
LIME1-201ENST00000309546 TGFB2P61812 414 aa26.04■■□□□ 1.76
LIME1-201ENST00000309546 DDR1Q08345 913 aa26.04■■□□□ 1.76
LIME1-201ENST00000309546 HEG1Q9ULI3 1381 aa26.04■■□□□ 1.76
LIME1-201ENST00000309546 RTF1Q92541 710 aaKnown RBP26.03■■□□□ 1.76
LIME1-201ENST00000309546 BTBD11A6QL63 1104 aa26.02■■□□□ 1.76
LIME1-201ENST00000309546 STARD3NLO95772 234 aa26.02■■□□□ 1.76
LIME1-201ENST00000309546 DPEP1P16444 411 aa26.02■■□□□ 1.76
LIME1-201ENST00000309546 BCS1LQ9Y276 419 aa26.02■■□□□ 1.76
LIME1-201ENST00000309546 BRCA1P38398 1863 aaKnown RBP26.02■■□□□ 1.76
LIME1-201ENST00000309546 NARFQ9UHQ1 456 aa26.01■■□□□ 1.75
LIME1-201ENST00000309546 ATP10DQ9P241 1426 aa26■■□□□ 1.75
LIME1-201ENST00000309546 MCM10Q7L590 875 aa26■■□□□ 1.75
LIME1-201ENST00000309546 FMNL2Q96PY5 1086 aa26■■□□□ 1.75
LIME1-201ENST00000309546 ZNF330Q9Y3S2 320 aaPredicted RBP26■■□□□ 1.75
LIME1-201ENST00000309546 POLRMTO00411 1230 aaKnown RBP25.99■■□□□ 1.75
LIME1-201ENST00000309546 KCNQ3O43525 872 aa25.99■■□□□ 1.75
LIME1-201ENST00000309546 AFDNP55196 1824 aaKnown RBP25.99■■□□□ 1.75
LIME1-201ENST00000309546 DLG5Q8TDM6 1919 aa25.98■■□□□ 1.75
LIME1-201ENST00000309546 GIGYF1O75420 1035 aaPredicted RBP25.97■■□□□ 1.75
LIME1-201ENST00000309546 NEFMP07197 916 aa25.97■■□□□ 1.75
LIME1-201ENST00000309546 TM4SF1P30408 202 aa25.97■■□□□ 1.75
LIME1-201ENST00000309546 DCTN1Q14203 1278 aa25.97■■□□□ 1.75
LIME1-201ENST00000309546 TEX13AQ9BXU3 409 aaPredicted RBP25.97■■□□□ 1.75
LIME1-201ENST00000309546 SCN7AQ01118 1682 aa25.96■■□□□ 1.75
LIME1-201ENST00000309546 NFIXQ14938 502 aa25.95■■□□□ 1.74
LIME1-201ENST00000309546 BCL2L12Q9HB09 334 aa25.95■■□□□ 1.74
LIME1-201ENST00000309546 ADCY9O60503 1353 aa25.95■■□□□ 1.74
LIME1-201ENST00000309546 ARFGEF1Q9Y6D6 1849 aa25.94■■□□□ 1.74
LIME1-201ENST00000309546 A0A087WZG4 1122 aa25.94■■□□□ 1.74
LIME1-201ENST00000309546 EIF5P55010 431 aaKnown RBP25.94■■□□□ 1.74
LIME1-201ENST00000309546 ZNF526Q8TF50 670 aaPredicted RBP25.93■■□□□ 1.74
LIME1-201ENST00000309546 NRXN2Q9P2S2 1712 aa25.93■■□□□ 1.74
LIME1-201ENST00000309546 BICDL1Q6ZP65 573 aa25.92■■□□□ 1.74
LIME1-201ENST00000309546 HTATSF1O43719 755 aaKnown RBP25.91■■□□□ 1.74
LIME1-201ENST00000309546 A1BGP04217 495 aa25.91■■□□□ 1.74
LIME1-201ENST00000309546 KCNA3P22001 575 aa25.91■■□□□ 1.74
LIME1-201ENST00000309546 CHRNA5P30532 468 aa25.91■■□□□ 1.74
LIME1-201ENST00000309546 C1QTNF8P60827 252 aa25.91■■□□□ 1.74
LIME1-201ENST00000309546 ARHGAP27Q6ZUM4 889 aa25.91■■□□□ 1.74
LIME1-201ENST00000309546 NPM2Q86SE8 214 aaKnown RBP25.91■■□□□ 1.74
LIME1-201ENST00000309546 PIM2Q9P1W9 311 aa25.91■■□□□ 1.74
LIME1-201ENST00000309546 SERPINB2P05120 415 aa25.9■■□□□ 1.74
LIME1-201ENST00000309546 IL6STP40189 918 aaPredicted RBP25.9■■□□□ 1.74
LIME1-201ENST00000309546 DDX10Q13206 875 aaKnown RBP25.9■■□□□ 1.74
LIME1-201ENST00000309546 TBC1D2BQ9UPU7 963 aa25.9■■□□□ 1.74
LIME1-201ENST00000309546 GPBP1L1Q9HC44 474 aaPredicted RBP25.89■■□□□ 1.74
LIME1-201ENST00000309546 BCORQ6W2J9 1755 aa25.88■■□□□ 1.73
LIME1-201ENST00000309546 PRAMEF22A3QJZ6 481 aa25.88■■□□□ 1.73
LIME1-201ENST00000309546 PIP4K2AP48426 406 aaPredicted RBP25.88■■□□□ 1.73
LIME1-201ENST00000309546 DALRD3Q5D0E6 543 aaKnown RBP25.88■■□□□ 1.73
LIME1-201ENST00000309546 USP16Q9Y5T5 823 aa25.88■■□□□ 1.73
LIME1-201ENST00000309546 MAPK8IP3Q9UPT6 1336 aa25.88■■□□□ 1.73
LIME1-201ENST00000309546 RALBP1Q15311 655 aa25.87■■□□□ 1.73
LIME1-201ENST00000309546 PLEKHF1Q96S99 279 aa25.87■■□□□ 1.73
LIME1-201ENST00000309546 SNRPA1P09661 255 aaKnown RBP25.86■■□□□ 1.73
LIME1-201ENST00000309546 TBC1D9BQ66K14 1250 aa25.86■■□□□ 1.73
LIME1-201ENST00000309546 DLEC1Q9Y238 1755 aa25.86■■□□□ 1.73
LIME1-201ENST00000309546 LAMB4A4D0S4 1761 aa25.85■■□□□ 1.73
LIME1-201ENST00000309546 TAF7Q15545 349 aaPredicted RBP25.85■■□□□ 1.73
LIME1-201ENST00000309546 NFE2L2Q16236 605 aa25.85■■□□□ 1.73
LIME1-201ENST00000309546 MIS18AQ9NYP9 233 aa25.85■■□□□ 1.73
LIME1-201ENST00000309546 KDM3BQ7LBC6 1761 aa25.84■■□□□ 1.73
LIME1-201ENST00000309546 CARMIL3Q8ND23 1372 aa25.84■■□□□ 1.73
LIME1-201ENST00000309546 SENP3-EIF4A1A0A087X0R7 540 aa25.84■■□□□ 1.73
LIME1-201ENST00000309546 PNNQ9H307 717 aaKnown RBP25.84■■□□□ 1.73
LIME1-201ENST00000309546 DZIP3Q86Y13 1208 aaKnown RBP25.83■■□□□ 1.73
LIME1-201ENST00000309546 THUMPD2Q9BTF0 503 aaKnown RBP25.82■■□□□ 1.72
LIME1-201ENST00000309546 ANKRD31Q8N7Z5 1873 aa25.82■■□□□ 1.72
LIME1-201ENST00000309546 CAMTA2O94983 1202 aa25.81■■□□□ 1.72
LIME1-201ENST00000309546 C2CD5Q86YS7 1000 aa25.8■■□□□ 1.72
LIME1-201ENST00000309546 MYBBP1AQ9BQG0 1328 aaKnown RBP25.8■■□□□ 1.72
LIME1-201ENST00000309546 PNISRQ8TF01 805 aaKnown RBP25.79■■□□□ 1.72
LIME1-201ENST00000309546 NPHP1O15259 732 aa25.78■■□□□ 1.72
LIME1-201ENST00000309546 CCDC24Q8N4L8 307 aa25.78■■□□□ 1.72
LIME1-201ENST00000309546 COL11A2P13942 1736 aaPredicted RBP25.77■■□□□ 1.72
LIME1-201ENST00000309546 C9orf131Q5VYM1 1079 aa25.77■■□□□ 1.72
LIME1-201ENST00000309546 SETDB2Q96T68 719 aa25.77■■□□□ 1.72
LIME1-201ENST00000309546 NBPF26B4DH59 902 aa25.76■■□□□ 1.71
LIME1-201ENST00000309546 H0YIN7 160 aa25.76■■□□□ 1.71
LIME1-201ENST00000309546 PRR5LQ6MZQ0 368 aa25.76■■□□□ 1.71
LIME1-201ENST00000309546 NBPF10Q6P3W6 841 aaKnown RBP25.76■■□□□ 1.71
LIME1-201ENST00000309546 NBPF15Q8N660 670 aa25.76■■□□□ 1.71
LIME1-201ENST00000309546 SBF1O95248 1867 aa25.75■■□□□ 1.71
LIME1-201ENST00000309546 CNBD1Q8NA66 436 aa25.75■■□□□ 1.71
LIME1-201ENST00000309546 TTLL6Q8N841 843 aa25.74■■□□□ 1.71
LIME1-201ENST00000309546 ZNF652Q9Y2D9 606 aa25.74■■□□□ 1.71
LIME1-201ENST00000309546 CACNA1SQ13698 1873 aa25.73■■□□□ 1.71
LIME1-201ENST00000309546 RNF181Q9P0P0 153 aa25.73■■□□□ 1.71
LIME1-201ENST00000309546 PDE6BP35913 854 aa25.72■■□□□ 1.71
LIME1-201ENST00000309546 RIPK4P57078 832 aa25.72■■□□□ 1.71
LIME1-201ENST00000309546 ST5P78524 1137 aa25.72■■□□□ 1.71
LIME1-201ENST00000309546 RASSF7Q02833 373 aa25.72■■□□□ 1.71
LIME1-201ENST00000309546 ZNF622Q969S3 477 aaKnown RBP eCLIP25.72■■□□□ 1.71
LIME1-201ENST00000309546 BRIP1Q9BX63 1249 aa25.72■■□□□ 1.71
LIME1-201ENST00000309546 EIF4A1P60842 406 aaKnown RBP25.71■■□□□ 1.71
LIME1-201ENST00000309546 CCDC146Q8IYE0 955 aa25.71■■□□□ 1.71
LIME1-201ENST00000309546 CLEC4GQ6UXB4 293 aa25.7■■□□□ 1.7
LIME1-201ENST00000309546 NGEFQ8N5V2 710 aa25.7■■□□□ 1.7
LIME1-201ENST00000309546 KIF3CO14782 793 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms