RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 KIAA2012Q0VF49 1180 aa17.71■□□□□ 0.42
PTPN9-201ENST00000306726 TCEANC2Q96MN5 208 aa17.71■□□□□ 0.42
PTPN9-201ENST00000306726 ZNF592Q92610 1267 aa17.7■□□□□ 0.42
PTPN9-201ENST00000306726 NPHP1O15259 732 aa17.7■□□□□ 0.42
PTPN9-201ENST00000306726 ZBTB9Q96C00 473 aa17.7■□□□□ 0.42
PTPN9-201ENST00000306726 AAMPQ13685 434 aa17.69■□□□□ 0.42
PTPN9-201ENST00000306726 SURF6O75683 361 aaKnown RBP17.69■□□□□ 0.42
PTPN9-201ENST00000306726 RBM25P49756 843 aaKnown RBP17.69■□□□□ 0.42
PTPN9-201ENST00000306726 CEBPZQ03701 1054 aaKnown RBP17.69■□□□□ 0.42
PTPN9-201ENST00000306726 HSP90AB2PQ58FF8 381 aa17.69■□□□□ 0.42
PTPN9-201ENST00000306726 USHBP1Q8N6Y0 703 aa17.69■□□□□ 0.42
PTPN9-201ENST00000306726 HMMRO75330 724 aa17.68■□□□□ 0.42
PTPN9-201ENST00000306726 MAPK8IP2Q13387 824 aaPredicted RBP17.68■□□□□ 0.42
PTPN9-201ENST00000306726 CAMK4Q16566 473 aa17.68■□□□□ 0.42
PTPN9-201ENST00000306726 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.68■□□□□ 0.42
PTPN9-201ENST00000306726 KIF2CQ99661 725 aa17.68■□□□□ 0.42
PTPN9-201ENST00000306726 SPG7Q9UQ90 795 aa17.68■□□□□ 0.42
PTPN9-201ENST00000306726 TTC22Q5TAA0 569 aa17.68■□□□□ 0.42
PTPN9-201ENST00000306726 TMEM63CQ9P1W3 806 aa17.68■□□□□ 0.42
PTPN9-201ENST00000306726 PHRF1Q9P1Y6 1649 aaKnown RBP17.68■□□□□ 0.42
PTPN9-201ENST00000306726 KLHL40Q2TBA0 621 aa17.68■□□□□ 0.42
PTPN9-201ENST00000306726 PLEKHF1Q96S99 279 aa17.68■□□□□ 0.42
PTPN9-201ENST00000306726 GOLGA6L4A6NEF3 574 aa17.67■□□□□ 0.42
PTPN9-201ENST00000306726 CBX1P83916 185 aa17.67■□□□□ 0.42
PTPN9-201ENST00000306726 ERC2O15083 957 aa17.67■□□□□ 0.42
PTPN9-201ENST00000306726 KDM4AO75164 1064 aa17.67■□□□□ 0.42
PTPN9-201ENST00000306726 GADD45BO75293 160 aaPredicted RBP17.67■□□□□ 0.42
PTPN9-201ENST00000306726 CWC27Q6UX04 472 aaKnown RBP17.67■□□□□ 0.42
PTPN9-201ENST00000306726 PHLPP1O60346 1717 aa17.67■□□□□ 0.42
PTPN9-201ENST00000306726 SPDYE4A6NLX3 237 aa17.67■□□□□ 0.42
PTPN9-201ENST00000306726 STK3Q13188 491 aa17.67■□□□□ 0.42
PTPN9-201ENST00000306726 TMX3Q96JJ7 454 aa17.67■□□□□ 0.42
PTPN9-201ENST00000306726 COL22A1Q8NFW1 1626 aaPredicted RBP17.66■□□□□ 0.42
PTPN9-201ENST00000306726 FGD1P98174 961 aa17.66■□□□□ 0.42
PTPN9-201ENST00000306726 CIZ1Q9ULV3 898 aaPredicted RBP17.66■□□□□ 0.42
PTPN9-201ENST00000306726 HCLS1P14317 486 aaPredicted RBP17.66■□□□□ 0.42
PTPN9-201ENST00000306726 PALD1Q9ULE6 856 aa17.65■□□□□ 0.42
PTPN9-201ENST00000306726 GPT2Q8TD30 523 aa17.65■□□□□ 0.42
PTPN9-201ENST00000306726 USP26Q9BXU7 913 aa17.65■□□□□ 0.42
PTPN9-201ENST00000306726 AK9Q5TCS8 1911 aa17.65■□□□□ 0.42
PTPN9-201ENST00000306726 FLT4P35916 1363 aa17.65■□□□□ 0.42
PTPN9-201ENST00000306726 MARF1Q9Y4F3 1742 aaKnown RBP17.65■□□□□ 0.42
PTPN9-201ENST00000306726 PNPLA6Q8IY17 1366 aa17.64■□□□□ 0.42
PTPN9-201ENST00000306726 SNX21Q969T3 373 aa17.64■□□□□ 0.41
PTPN9-201ENST00000306726 NFAT5O94916 1531 aa17.64■□□□□ 0.41
PTPN9-201ENST00000306726 AIMP1Q12904 312 aaKnown RBP17.64■□□□□ 0.41
PTPN9-201ENST00000306726 FAM173BQ6P4H8 233 aa17.64■□□□□ 0.41
PTPN9-201ENST00000306726 LMBRD1Q9NUN5 540 aa17.64■□□□□ 0.41
PTPN9-201ENST00000306726 COL16A1Q07092 1604 aaPredicted RBP17.63■□□□□ 0.41
PTPN9-201ENST00000306726 GIMAP6Q6P9H5 292 aa17.63■□□□□ 0.41
PTPN9-201ENST00000306726 TSPY26PQ9H489 355 aa17.63■□□□□ 0.41
PTPN9-201ENST00000306726 CPDO75976 1380 aa17.63■□□□□ 0.41
PTPN9-201ENST00000306726 ALDH1L2Q3SY69 923 aa17.62■□□□□ 0.41
PTPN9-201ENST00000306726 LRRFIP2Q9Y608 721 aaKnown RBP17.62■□□□□ 0.41
PTPN9-201ENST00000306726 SIL1Q9H173 461 aa17.61■□□□□ 0.41
PTPN9-201ENST00000306726 CNPY2Q9Y2B0 182 aa17.61■□□□□ 0.41
PTPN9-201ENST00000306726 CRYBG1Q9Y4K1 1723 aa17.61■□□□□ 0.41
PTPN9-201ENST00000306726 CT47B1P0C2W7 299 aaPredicted RBP17.61■□□□□ 0.41
PTPN9-201ENST00000306726 TPM2P07951 284 aa17.6■□□□□ 0.41
PTPN9-201ENST00000306726 LMOD3Q0VAK6 560 aa17.6■□□□□ 0.41
PTPN9-201ENST00000306726 GCP02774 474 aa17.6■□□□□ 0.41
PTPN9-201ENST00000306726 CEP85Q6P2H3 762 aa17.6■□□□□ 0.41
PTPN9-201ENST00000306726 CCDC83Q8IWF9 413 aa17.6■□□□□ 0.41
PTPN9-201ENST00000306726 MAP2P11137 1827 aaKnown RBP17.6■□□□□ 0.41
PTPN9-201ENST00000306726 NECAB1Q8N987 351 aa17.6■□□□□ 0.41
PTPN9-201ENST00000306726 SHPRHQ149N8 1683 aa17.59■□□□□ 0.41
PTPN9-201ENST00000306726 PTMSP20962 102 aa17.59■□□□□ 0.41
PTPN9-201ENST00000306726 CFAP44Q96MT7 982 aa17.59■□□□□ 0.41
PTPN9-201ENST00000306726 CKAP2LQ8IYA6 745 aa17.59■□□□□ 0.41
PTPN9-201ENST00000306726 SMC3Q9UQE7 1217 aa17.59■□□□□ 0.41
PTPN9-201ENST00000306726 HAP1P54257 671 aaPredicted RBP17.59■□□□□ 0.41
PTPN9-201ENST00000306726 TFIP11Q9UBB9 837 aaKnown RBP17.59■□□□□ 0.41
PTPN9-201ENST00000306726 JCADQ9P266 1359 aa17.58■□□□□ 0.41
PTPN9-201ENST00000306726 COL3A1P02461 1466 aaPredicted RBP17.58■□□□□ 0.41
PTPN9-201ENST00000306726 PIP4K2BP78356 416 aa17.58■□□□□ 0.4
PTPN9-201ENST00000306726 UNC5CLQ8IV45 518 aa17.58■□□□□ 0.4
PTPN9-201ENST00000306726 SYAP1Q96A49 352 aaPredicted RBP17.58■□□□□ 0.4
PTPN9-201ENST00000306726 PDE1AP54750 535 aa17.58■□□□□ 0.4
PTPN9-201ENST00000306726 USP48Q86UV5 1035 aa17.58■□□□□ 0.4
PTPN9-201ENST00000306726 LRRCC1Q9C099 1032 aa17.58■□□□□ 0.4
PTPN9-201ENST00000306726 PLEKHG2Q9H7P9 1386 aa17.57■□□□□ 0.4
PTPN9-201ENST00000306726 ABCA3Q99758 1704 aa17.57■□□□□ 0.4
PTPN9-201ENST00000306726 PNMA6EA0A0J9YXQ4 647 aa17.57■□□□□ 0.4
PTPN9-201ENST00000306726 IP6K1Q92551 441 aa17.57■□□□□ 0.4
PTPN9-201ENST00000306726 DCTPP1Q9H773 170 aa17.57■□□□□ 0.4
PTPN9-201ENST00000306726 GNAI2P04899 355 aa17.57■□□□□ 0.4
PTPN9-201ENST00000306726 IFT57Q9NWB7 429 aa17.57■□□□□ 0.4
PTPN9-201ENST00000306726 ZNF330Q9Y3S2 320 aaPredicted RBP17.57■□□□□ 0.4
PTPN9-201ENST00000306726 MAP3K19Q56UN5 1328 aa17.57■□□□□ 0.4
PTPN9-201ENST00000306726 UBTFL1P0CB47 393 aaPredicted RBP17.56■□□□□ 0.4
PTPN9-201ENST00000306726 PHF23Q9BUL5 403 aaPredicted RBP17.56■□□□□ 0.4
PTPN9-201ENST00000306726 MX1P20591 662 aa17.56■□□□□ 0.4
PTPN9-201ENST00000306726 ARHGEF25Q86VW2 580 aa17.56■□□□□ 0.4
PTPN9-201ENST00000306726 DIAPH3Q9NSV4 1193 aa17.56■□□□□ 0.4
PTPN9-201ENST00000306726 FAM208AQ9UK61 1670 aaKnown RBP17.56■□□□□ 0.4
PTPN9-201ENST00000306726 LTN1O94822 1766 aa17.56■□□□□ 0.4
PTPN9-201ENST00000306726 SRGAP3O43295 1099 aa17.55■□□□□ 0.4
PTPN9-201ENST00000306726 CCDC39Q9UFE4 941 aa17.55■□□□□ 0.4
PTPN9-201ENST00000306726 STK11IPQ8N1F8 1099 aa17.55■□□□□ 0.4
PTPN9-201ENST00000306726 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms