RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 EVI5LQ96CN4 794 aa14.97□□□□□ -0.01
COL3A1-201ENST00000304636 BOLA2Q9H3K6 86 aa14.97□□□□□ -0.01
COL3A1-201ENST00000304636 FAM69CQ0P6D2 419 aa14.96□□□□□ -0.01
COL3A1-201ENST00000304636 CCDC150Q8NCX0 1101 aa14.96□□□□□ -0.01
COL3A1-201ENST00000304636 SPG7Q9UQ90 795 aa14.96□□□□□ -0.01
COL3A1-201ENST00000304636 CABP4P57796 275 aa14.96□□□□□ -0.01
COL3A1-201ENST00000304636 ANAPC15P60006 121 aa14.96□□□□□ -0.01
COL3A1-201ENST00000304636 KRT222Q8N1A0 295 aa14.96□□□□□ -0.01
COL3A1-201ENST00000304636 FAM107BQ9H098 131 aa14.96□□□□□ -0.01
COL3A1-201ENST00000304636 ASXL1Q8IXJ9 1541 aa14.96□□□□□ -0.01
COL3A1-201ENST00000304636 KIF14Q15058 1648 aa14.96□□□□□ -0.01
COL3A1-201ENST00000304636 SDSP20132 328 aa14.95□□□□□ -0.02
COL3A1-201ENST00000304636 CYB5RLQ6IPT4 315 aa14.95□□□□□ -0.02
COL3A1-201ENST00000304636 TMC6Q7Z403 805 aa14.95□□□□□ -0.02
COL3A1-201ENST00000304636 GTF2F1P35269 517 aaKnown RBP eCLIP14.95□□□□□ -0.02
COL3A1-201ENST00000304636 TAF7Q15545 349 aaPredicted RBP14.95□□□□□ -0.02
COL3A1-201ENST00000304636 DDX54Q8TDD1 881 aaKnown RBP14.95□□□□□ -0.02
COL3A1-201ENST00000304636 GIMAP6Q6P9H5 292 aa14.95□□□□□ -0.02
COL3A1-201ENST00000304636 TFIP11Q9UBB9 837 aaKnown RBP14.95□□□□□ -0.02
COL3A1-201ENST00000304636 TAF4BQ92750 862 aa14.94□□□□□ -0.02
COL3A1-201ENST00000304636 TDO2P48775 406 aa14.94□□□□□ -0.02
COL3A1-201ENST00000304636 PRIM1P49642 420 aaKnown RBP14.94□□□□□ -0.02
COL3A1-201ENST00000304636 MBIPQ9NS73 344 aa14.94□□□□□ -0.02
COL3A1-201ENST00000304636 ADGRF5Q8IZF2 1346 aa14.94□□□□□ -0.02
COL3A1-201ENST00000304636 USP48Q86UV5 1035 aa14.94□□□□□ -0.02
COL3A1-201ENST00000304636 FAM200AQ8TCP9 573 aa14.94□□□□□ -0.02
COL3A1-201ENST00000304636 ECHDC1Q9NTX5 307 aa14.94□□□□□ -0.02
COL3A1-201ENST00000304636 SPA17Q15506 151 aa14.94□□□□□ -0.02
COL3A1-201ENST00000304636 ZRSR2Q15696 482 aaKnown RBP14.94□□□□□ -0.02
COL3A1-201ENST00000304636 ZNF830Q96NB3 372 aaPredicted RBP14.94□□□□□ -0.02
COL3A1-201ENST00000304636 SOGA3Q5TF21 947 aa14.93□□□□□ -0.02
COL3A1-201ENST00000304636 LARP6Q9BRS8 491 aaKnown RBP14.93□□□□□ -0.02
COL3A1-201ENST00000304636 LARP1Q6PKG0 1096 aaKnown RBP14.93□□□□□ -0.02
COL3A1-201ENST00000304636 TIGD1Q96MW7 591 aa14.93□□□□□ -0.02
COL3A1-201ENST00000304636 PTPRKQ15262 1439 aa14.93□□□□□ -0.02
COL3A1-201ENST00000304636 CC2D2AQ9P2K1 1620 aa14.93□□□□□ -0.02
COL3A1-201ENST00000304636 FLIIQ13045 1269 aa14.93□□□□□ -0.02
COL3A1-201ENST00000304636 DNAAF4Q8WXU2 420 aa14.93□□□□□ -0.02
COL3A1-201ENST00000304636 CCDC94Q9BW85 323 aaPredicted RBP14.93□□□□□ -0.02
COL3A1-201ENST00000304636 ZSCAN16Q9H4T2 348 aaPredicted RBP14.93□□□□□ -0.02
COL3A1-201ENST00000304636 MAPK8IP2Q13387 824 aaPredicted RBP14.92□□□□□ -0.02
COL3A1-201ENST00000304636 GTPBP4Q9BZE4 634 aaKnown RBP14.92□□□□□ -0.02
COL3A1-201ENST00000304636 BMP2KQ9NSY1 1161 aaPredicted RBP14.92□□□□□ -0.02
COL3A1-201ENST00000304636 EMILIN1Q9Y6C2 1016 aa14.92□□□□□ -0.02
COL3A1-201ENST00000304636 ANKRD36BQ8N2N9 1353 aa14.92□□□□□ -0.02
COL3A1-201ENST00000304636 HMG20BQ9P0W2 317 aa14.92□□□□□ -0.02
COL3A1-201ENST00000304636 CNNM3Q8NE01 707 aa14.92□□□□□ -0.02
COL3A1-201ENST00000304636 GUCY1B3Q02153 619 aa14.92□□□□□ -0.02
COL3A1-201ENST00000304636 PHAXQ9H814 394 aaKnown RBP14.92□□□□□ -0.02
COL3A1-201ENST00000304636 AKAP2Q9Y2D5 859 aa14.92□□□□□ -0.02
COL3A1-201ENST00000304636 GIMAP7Q8NHV1 300 aa14.91□□□□□ -0.02
COL3A1-201ENST00000304636 AIDAQ96BJ3 306 aa14.91□□□□□ -0.02
COL3A1-201ENST00000304636 RBM42Q9BTD8 480 aaKnown RBP14.91□□□□□ -0.02
COL3A1-201ENST00000304636 PLCD4Q9BRC7 762 aa14.91□□□□□ -0.02
COL3A1-201ENST00000304636 CNPY2Q9Y2B0 182 aa14.91□□□□□ -0.02
COL3A1-201ENST00000304636 RBM25P49756 843 aaKnown RBP14.91□□□□□ -0.02
COL3A1-201ENST00000304636 CCDC196A0A1B0GTZ2 297 aa14.91□□□□□ -0.02
COL3A1-201ENST00000304636 CCDC8Q9H0W5 538 aaPredicted RBP14.91□□□□□ -0.02
COL3A1-201ENST00000304636 BIVM-ERCC5R4GMW8 1640 aa14.91□□□□□ -0.02
COL3A1-201ENST00000304636 FAM177BA6PVY3 158 aa14.91□□□□□ -0.02
COL3A1-201ENST00000304636 IKQ13123 557 aaPredicted RBP14.91□□□□□ -0.02
COL3A1-201ENST00000304636 KLHL10Q6JEL2 608 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 CCDC186Q7Z3E2 898 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 NME9Q86XW9 330 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 ESYT1Q9BSJ8 1104 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 TUBB4AP04350 444 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 TAX1BP1Q86VP1 789 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 MPHOSPH8Q99549 860 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 NUP160Q12769 1436 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 ANKRD44Q8N8A2 993 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 SEC24BO95487 1268 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 YEATS4O95619 227 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 MICALCLQ6ZW33 695 aa14.9□□□□□ -0.02
COL3A1-201ENST00000304636 IDH1O75874 414 aaKnown RBP14.89□□□□□ -0.03
COL3A1-201ENST00000304636 IFIT1P09914 478 aaKnown RBP14.89□□□□□ -0.03
COL3A1-201ENST00000304636 NEFHP12036 1026 aa14.89□□□□□ -0.03
COL3A1-201ENST00000304636 PDE1AP54750 535 aa14.89□□□□□ -0.03
COL3A1-201ENST00000304636 ENOX2Q16206 610 aaKnown RBP14.89□□□□□ -0.03
COL3A1-201ENST00000304636 ANO6Q4KMQ2 910 aa14.89□□□□□ -0.03
COL3A1-201ENST00000304636 SKILP12757 684 aa14.89□□□□□ -0.03
COL3A1-201ENST00000304636 SEPT7Q16181 437 aaKnown RBP14.89□□□□□ -0.03
COL3A1-201ENST00000304636 FKBP15Q5T1M5 1219 aa14.89□□□□□ -0.03
COL3A1-201ENST00000304636 TRERF1Q96PN7 1200 aa14.89□□□□□ -0.03
COL3A1-201ENST00000304636 ZHX3Q9H4I2 956 aa14.89□□□□□ -0.03
COL3A1-201ENST00000304636 POLR3AO14802 1390 aaPredicted RBP14.89□□□□□ -0.03
COL3A1-201ENST00000304636 SMARCC1Q92922 1105 aaPredicted RBP14.89□□□□□ -0.03
COL3A1-201ENST00000304636 THOC2Q8NI27 1593 aaKnown RBP14.89□□□□□ -0.03
COL3A1-201ENST00000304636 RRAGDQ9NQL2 400 aaPredicted RBP14.89□□□□□ -0.03
COL3A1-201ENST00000304636 NUP88Q99567 741 aaPredicted RBP14.88□□□□□ -0.03
COL3A1-201ENST00000304636 F13A1P00488 732 aa14.88□□□□□ -0.03
COL3A1-201ENST00000304636 NEK1Q96PY6 1258 aa14.88□□□□□ -0.03
COL3A1-201ENST00000304636 TTC12Q9H892 705 aaPredicted RBP14.88□□□□□ -0.03
COL3A1-201ENST00000304636 BIN1O00499 593 aa14.88□□□□□ -0.03
COL3A1-201ENST00000304636 RAI14Q9P0K7 980 aa14.88□□□□□ -0.03
COL3A1-201ENST00000304636 LMAN1P49257 510 aa14.88□□□□□ -0.03
COL3A1-201ENST00000304636 CCT2P78371 535 aaKnown RBP14.88□□□□□ -0.03
COL3A1-201ENST00000304636 PLB1Q6P1J6 1458 aa14.88□□□□□ -0.03
COL3A1-201ENST00000304636 USO1O60763 962 aaKnown RBP14.88□□□□□ -0.03
COL3A1-201ENST00000304636 TSHZ3Q63HK5 1081 aa14.88□□□□□ -0.03
COL3A1-201ENST00000304636 UGGT2Q9NYU1 1516 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms