RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ADGRF5Q8IZF2 1346 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 TMCO5BA8MYB1 307 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 GNAI2P04899 355 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 LMBRD1Q9NUN5 540 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 CFAP45Q9UL16 551 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 CDC42BPGQ6DT37 1551 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 GSDMDP57764 484 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 LRRFIP1Q32MZ4 808 aaKnown RBP7.53□□□□□ -1.2
VPS35-201ENST00000299138 SLC12A5Q9H2X9 1139 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 HECW2Q9P2P5 1572 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 PRPF40AO75400 957 aaKnown RBP7.53□□□□□ -1.2
VPS35-201ENST00000299138 HOXB7P09629 217 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 SSR1P43307 286 aaKnown RBP7.53□□□□□ -1.2
VPS35-201ENST00000299138 BICD2Q8TD16 824 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 CALCOCO1Q9P1Z2 691 aa7.53□□□□□ -1.2
VPS35-201ENST00000299138 FRMPD1Q5SYB0 1578 aa7.52□□□□□ -1.2
VPS35-201ENST00000299138 ARID4AP29374 1257 aaPredicted RBP7.52□□□□□ -1.2
VPS35-201ENST00000299138 KRT85P78386 507 aa7.52□□□□□ -1.2
VPS35-201ENST00000299138 PAF1Q8N7H5 531 aa7.52□□□□□ -1.2
VPS35-201ENST00000299138 SPINK5Q9NQ38 1064 aaPredicted RBP7.52□□□□□ -1.2
VPS35-201ENST00000299138 SMC3Q9UQE7 1217 aa7.52□□□□□ -1.2
VPS35-201ENST00000299138 CCDC9Q9Y3X0 531 aaKnown RBP7.52□□□□□ -1.2
VPS35-201ENST00000299138 ERCC6L2Q5T890 1561 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 NPHP3Q7Z494 1330 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 MX1P20591 662 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 SSFA2P28290 1259 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 SEC24BO95487 1268 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 NEXMIFQ5QGS0 1516 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 RGS12O14924 1447 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 CCDC175P0C221 793 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 ZNF853P0CG23 659 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 EDC4Q6P2E9 1401 aaKnown RBP7.52□□□□□ -1.21
VPS35-201ENST00000299138 SPATA24Q86W54 205 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 TRIM34Q9BYJ4 488 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 RRP7AQ9Y3A4 280 aaKnown RBP7.52□□□□□ -1.21
VPS35-201ENST00000299138 CEP152O94986 1710 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 VAMP4O75379 141 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 FAM200AQ8TCP9 573 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 CCDC102AQ96A19 550 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 RBM33Q96EV2 1170 aaKnown RBP7.52□□□□□ -1.21
VPS35-201ENST00000299138 OGFRQ9NZT2 677 aa7.52□□□□□ -1.21
VPS35-201ENST00000299138 GOLGA6L9A6NEM1 432 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 ATP8B1O43520 1251 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 TDO2P48775 406 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 PANK2Q9BZ23 570 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 CDC42BPBQ9Y5S2 1711 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 PRKAR2BP31323 418 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 NEK4P51957 841 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 MPNDQ8N594 471 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 LRRCC1Q9C099 1032 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 CCDC112Q8NEF3 446 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 TMX4Q9H1E5 349 aaPredicted RBP7.51□□□□□ -1.21
VPS35-201ENST00000299138 DLC1Q96QB1 1528 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 INO80Q9ULG1 1556 aaPredicted RBP7.51□□□□□ -1.21
VPS35-201ENST00000299138 SPC24Q8NBT2 197 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 ELP1O95163 1332 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 EZRP15311 586 aaKnown RBP7.51□□□□□ -1.21
VPS35-201ENST00000299138 NOLC1Q14978 699 aaKnown RBP eCLIP7.51□□□□□ -1.214e-8■■□□□ 11.8
VPS35-201ENST00000299138 CTR9Q6PD62 1173 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 CNTROBQ8N137 903 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 SMTNL1A8MU46 457 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 RNF187Q5TA31 235 aaPredicted RBP7.51□□□□□ -1.21
VPS35-201ENST00000299138 CCDC30Q5VVM6 783 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 BCL2L13Q9BXK5 485 aa7.51□□□□□ -1.21
VPS35-201ENST00000299138 TTC41PQ6P2S7 1318 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 SLFNL1Q499Z3 407 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 DDX11Q96FC9 970 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 PLEKHF1Q96S99 279 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 HMG20BQ9P0W2 317 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 V9GYY5 206 aaPredicted RBP7.5□□□□□ -1.21
VPS35-201ENST00000299138 PLEKHM2Q8IWE5 1019 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 SPTLC3Q9NUV7 552 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 LIMCH1Q9UPQ0 1083 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 CLTCL1P53675 1640 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 EIF3JO75822 258 aaKnown RBP7.5□□□□□ -1.21
VPS35-201ENST00000299138 STAP2Q9UGK3 403 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 FOSBP53539 338 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 FLIIQ13045 1269 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 SEPT6Q14141 434 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 JAKMIP3Q5VZ66 844 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 MNAT1P51948 309 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 FKBP5Q13451 457 aaPredicted RBP7.5□□□□□ -1.21
VPS35-201ENST00000299138 CFAP57Q96MR6 1250 aa7.5□□□□□ -1.21
VPS35-201ENST00000299138 VIRMAQ69YN4 1812 aaKnown RBP7.49□□□□□ -1.21
VPS35-201ENST00000299138 SERPINA10Q9UK55 444 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 GBP2P32456 591 aaPredicted RBP7.49□□□□□ -1.21
VPS35-201ENST00000299138 MAP2K1Q02750 393 aaPredicted RBP7.49□□□□□ -1.21
VPS35-201ENST00000299138 FAM177A1Q8N128 213 aaPredicted RBP7.49□□□□□ -1.21
VPS35-201ENST00000299138 DNAJC2Q99543 621 aaKnown RBP7.49□□□□□ -1.21
VPS35-201ENST00000299138 RIMS2Q9UQ26 1411 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 ERLIN2O94905 339 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 KCNJ6P48051 423 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 SOGA3Q5TF21 947 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 MICALCLQ6ZW33 695 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 DZIP1Q86YF9 867 aaKnown RBP7.49□□□□□ -1.21
VPS35-201ENST00000299138 CCDC160A6NGH7 325 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 GLRX3O76003 335 aaKnown RBP7.49□□□□□ -1.21
VPS35-201ENST00000299138 MAP3K11Q16584 847 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 POGZQ7Z3K3 1410 aa7.49□□□□□ -1.21
VPS35-201ENST00000299138 TUBB2AQ13885 445 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms