RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 RANBP6O60518 1105 aaKnown RBP21.78■■□□□ 1.08
PCDH1-201ENST00000287008 ANXA1P04083 346 aa21.77■■□□□ 1.08
PCDH1-201ENST00000287008 ABCC10Q5T3U5 1492 aa21.77■■□□□ 1.08
PCDH1-201ENST00000287008 RAPGEF6Q8TEU7 1601 aa21.77■■□□□ 1.08
PCDH1-201ENST00000287008 BIVM-ERCC5R4GMW8 1640 aa21.77■■□□□ 1.08
PCDH1-201ENST00000287008 NUP153P49790 1475 aaKnown RBP21.77■■□□□ 1.08
PCDH1-201ENST00000287008 ECHDC1Q9NTX5 307 aa21.77■■□□□ 1.08
PCDH1-201ENST00000287008 ZNF622Q969S3 477 aaKnown RBP eCLIP21.77■■□□□ 1.08
PCDH1-201ENST00000287008 IL16Q14005 1332 aa21.77■■□□□ 1.07
PCDH1-201ENST00000287008 TTLL5Q6EMB2 1281 aa21.76■■□□□ 1.07
PCDH1-201ENST00000287008 TRAPPC8Q9Y2L5 1435 aa21.76■■□□□ 1.07
PCDH1-201ENST00000287008 SERPINC1P01008 464 aa21.76■■□□□ 1.07
PCDH1-201ENST00000287008 TNNT3P45378 269 aaPredicted RBP21.76■■□□□ 1.07
PCDH1-201ENST00000287008 RUFY1Q96T51 708 aa21.76■■□□□ 1.07
PCDH1-201ENST00000287008 ZNF213O14771 459 aa21.76■■□□□ 1.07
PCDH1-201ENST00000287008 TTLL12Q14166 644 aaPredicted RBP21.75■■□□□ 1.07
PCDH1-201ENST00000287008 CDR1P51861 262 aa21.75■■□□□ 1.07
PCDH1-201ENST00000287008 CCDC39Q9UFE4 941 aa21.75■■□□□ 1.07
PCDH1-201ENST00000287008 KAT6BQ8WYB5 2073 aa21.74■■□□□ 1.07
PCDH1-201ENST00000287008 CABLES1Q8TDN4 633 aa21.74■■□□□ 1.07
PCDH1-201ENST00000287008 ACSBG1Q96GR2 724 aa21.74■■□□□ 1.07
PCDH1-201ENST00000287008 TANGO6Q9C0B7 1094 aa21.74■■□□□ 1.07
PCDH1-201ENST00000287008 PPIP5K1Q6PFW1 1433 aa21.74■■□□□ 1.07
PCDH1-201ENST00000287008 CIZ1Q9ULV3 898 aaPredicted RBP21.74■■□□□ 1.07
PCDH1-201ENST00000287008 HMGB1P09429 215 aaKnown RBP21.74■■□□□ 1.07
PCDH1-201ENST00000287008 CAGE1Q8TC20 777 aa21.74■■□□□ 1.07
PCDH1-201ENST00000287008 LRRC59Q96AG4 307 aaKnown RBP21.74■■□□□ 1.07
PCDH1-201ENST00000287008 LUC7LQ9NQ29 371 aaKnown RBP21.74■■□□□ 1.07
PCDH1-201ENST00000287008 ARGLU1Q9NWB6 273 aaPredicted RBP21.74■■□□□ 1.07
PCDH1-201ENST00000287008 TTF1Q15361 905 aaPredicted RBP21.73■■□□□ 1.07
PCDH1-201ENST00000287008 SYCP2Q9BX26 1530 aa21.73■■□□□ 1.07
PCDH1-201ENST00000287008 CCDC96Q2M329 555 aa21.73■■□□□ 1.07
PCDH1-201ENST00000287008 BAG3O95817 575 aa21.73■■□□□ 1.07
PCDH1-201ENST00000287008 ST5P78524 1137 aa21.73■■□□□ 1.07
PCDH1-201ENST00000287008 ATP6V1AP38606 617 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 CEP131Q9UPN4 1083 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 KCNA6P17658 529 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 TNIP1Q15025 636 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 CCDC152Q4G0S7 254 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 FAM43AQ8N2R8 423 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 SNRKQ9NRH2 765 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 TBX22Q9Y458 520 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 IL2RBP14784 551 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 C20orf194Q5TEA3 1177 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 WDR78Q5VTH9 848 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 AKAP4Q5JQC9 854 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.72■■□□□ 1.07
PCDH1-201ENST00000287008 SETDB2Q96T68 719 aa21.72■■□□□ 1.07
PCDH1-201ENST00000287008 SLC39A6Q13433 755 aa21.71■■□□□ 1.07
PCDH1-201ENST00000287008 PPFIBP1Q86W92 1011 aa21.71■■□□□ 1.07
PCDH1-201ENST00000287008 XAGE3Q8WTP9 111 aa21.71■■□□□ 1.07
PCDH1-201ENST00000287008 ZMYM3Q14202 1370 aa21.71■■□□□ 1.07
PCDH1-201ENST00000287008 GOLIM4O00461 696 aa21.71■■□□□ 1.07
PCDH1-201ENST00000287008 SPTY2D1Q68D10 685 aaPredicted RBP21.71■■□□□ 1.07
PCDH1-201ENST00000287008 COPS6Q7L5N1 327 aa21.71■■□□□ 1.07
PCDH1-201ENST00000287008 EVI5LQ96CN4 794 aa21.7■■□□□ 1.06
PCDH1-201ENST00000287008 NLRP3Q96P20 1036 aa21.7■■□□□ 1.06
PCDH1-201ENST00000287008 ACBD3Q9H3P7 528 aa21.7■■□□□ 1.06
PCDH1-201ENST00000287008 CEP57L1Q8IYX8 460 aa21.7■■□□□ 1.06
PCDH1-201ENST00000287008 FERMT3Q86UX7 667 aa21.7■■□□□ 1.06
PCDH1-201ENST00000287008 IFIT3O14879 490 aaKnown RBP21.7■■□□□ 1.06
PCDH1-201ENST00000287008 GCP02774 474 aa21.7■■□□□ 1.06
PCDH1-201ENST00000287008 CCDC83Q8IWF9 413 aa21.7■■□□□ 1.06
PCDH1-201ENST00000287008 NCKAP5LQ9HCH0 1330 aa21.69■■□□□ 1.06
PCDH1-201ENST00000287008 CCDC82Q8N4S0 544 aa21.69■■□□□ 1.06
PCDH1-201ENST00000287008 FEZ1Q99689 392 aa21.69■■□□□ 1.06
PCDH1-201ENST00000287008 DHX8Q14562 1220 aaKnown RBP21.69■■□□□ 1.06
PCDH1-201ENST00000287008 PUS7Q96PZ0 661 aaKnown RBP21.69■■□□□ 1.06
PCDH1-201ENST00000287008 SLC12A7Q9Y666 1083 aa21.69■■□□□ 1.06
PCDH1-201ENST00000287008 DEF6Q9H4E7 631 aa21.68■■□□□ 1.06
PCDH1-201ENST00000287008 SH2B1Q9NRF2 756 aaPredicted RBP21.68■■□□□ 1.06
PCDH1-201ENST00000287008 EIF4A2Q14240 407 aaKnown RBP21.68■■□□□ 1.06
PCDH1-201ENST00000287008 CCP110O43303 1012 aa21.68■■□□□ 1.06
PCDH1-201ENST00000287008 PAXIP1Q6ZW49 1069 aaPredicted RBP21.68■■□□□ 1.06
PCDH1-201ENST00000287008 CHPF2Q9P2E5 772 aa21.68■■□□□ 1.06
PCDH1-201ENST00000287008 FLT4P35916 1363 aa21.67■■□□□ 1.06
PCDH1-201ENST00000287008 UQCRFS1P1P0C7P4 283 aa21.67■■□□□ 1.06
PCDH1-201ENST00000287008 ANKRD18AQ8IVF6 992 aa21.67■■□□□ 1.06
PCDH1-201ENST00000287008 JARID2Q92833 1246 aaPredicted RBP21.67■■□□□ 1.06
PCDH1-201ENST00000287008 HSP90B2PQ58FF3 399 aa21.67■■□□□ 1.06
PCDH1-201ENST00000287008 MYO6Q9UM54 1294 aa21.67■■□□□ 1.06
PCDH1-201ENST00000287008 C8orf76Q96K31 380 aa21.67■■□□□ 1.06
PCDH1-201ENST00000287008 NUP62CLQ9H1M0 184 aa21.67■■□□□ 1.06
PCDH1-201ENST00000287008 POLKQ9UBT6 870 aa21.66■■□□□ 1.06
PCDH1-201ENST00000287008 NUP160Q12769 1436 aa21.66■■□□□ 1.06
PCDH1-201ENST00000287008 HMGN5P82970 282 aaKnown RBP21.66■■□□□ 1.06
PCDH1-201ENST00000287008 CABP5Q9NP86 173 aa21.66■■□□□ 1.06
PCDH1-201ENST00000287008 HLA-DOAP06340 250 aa21.66■■□□□ 1.06
PCDH1-201ENST00000287008 CATIPQ7Z7H3 387 aa21.65■■□□□ 1.06
PCDH1-201ENST00000287008 CUL5Q93034 780 aa21.65■■□□□ 1.06
PCDH1-201ENST00000287008 ARHGAP45Q92619 1136 aa21.65■■□□□ 1.06
PCDH1-201ENST00000287008 RAB34Q9BZG1 259 aa21.65■■□□□ 1.06
PCDH1-201ENST00000287008 PDE4BQ07343 736 aa21.64■■□□□ 1.06
PCDH1-201ENST00000287008 NOM1Q5C9Z4 860 aaKnown RBP21.64■■□□□ 1.06
PCDH1-201ENST00000287008 RALGAPBQ86X10 1494 aa21.64■■□□□ 1.06
PCDH1-201ENST00000287008 ZRANB1Q9UGI0 708 aa21.64■■□□□ 1.06
PCDH1-201ENST00000287008 NIP7Q9Y221 180 aaKnown RBP eCLIP21.64■■□□□ 1.06
PCDH1-201ENST00000287008 UGGT2Q9NYU1 1516 aa21.64■■□□□ 1.05
PCDH1-201ENST00000287008 ALDH1L1O75891 902 aa21.64■■□□□ 1.05
PCDH1-201ENST00000287008 MATR3P43243 847 aaKnown RBP eCLIP21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms