RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 PLEKHF1Q96S99 279 aa21.36■■□□□ 1.01
USE1-201ENST00000263897 CANXP27824 592 aaKnown RBP21.35■■□□□ 1.01
USE1-201ENST00000263897 DCTN1Q14203 1278 aa21.35■■□□□ 1.01
USE1-201ENST00000263897 USPL1Q5W0Q7 1092 aa21.35■■□□□ 1.01
USE1-201ENST00000263897 PNNQ9H307 717 aaKnown RBP21.35■■□□□ 1.01
USE1-201ENST00000263897 NARFQ9UHQ1 456 aa21.35■■□□□ 1.01
USE1-201ENST00000263897 TM4SF1P30408 202 aa21.34■■□□□ 1.01
USE1-201ENST00000263897 TGFB2P61812 414 aa21.34■■□□□ 1.01
USE1-201ENST00000263897 EIF5P55010 431 aaKnown RBP21.33■■□□□ 1.01
USE1-201ENST00000263897 COL15A1P39059 1388 aa21.33■■□□□ 1
USE1-201ENST00000263897 DDR1Q08345 913 aa21.32■■□□□ 1
USE1-201ENST00000263897 TAF7Q15545 349 aaPredicted RBP21.32■■□□□ 1
USE1-201ENST00000263897 ZNF784Q8NCA9 323 aaPredicted RBP21.32■■□□□ 1
USE1-201ENST00000263897 UTRNP46939 3433 aa21.32■■□□□ 1
USE1-201ENST00000263897 KIF13BQ9NQT8 1826 aa21.32■■□□□ 1
USE1-201ENST00000263897 A0A087WZG4 1122 aa21.3■■□□□ 1
USE1-201ENST00000263897 A0A0G2JLW4 131 aa21.3■■□□□ 1
USE1-201ENST00000263897 NFE2L2Q16236 605 aa21.3■■□□□ 1
USE1-201ENST00000263897 BCL2L12Q9HB09 334 aa21.3■■□□□ 1
USE1-201ENST00000263897 WWC3Q9ULE0 1092 aa21.3■■□□□ 1
USE1-201ENST00000263897 MYBBP1AQ9BQG0 1328 aaKnown RBP21.29■■□□□ 1
USE1-201ENST00000263897 C10orf71Q711Q0 1435 aa21.29■■□□□ 1
USE1-201ENST00000263897 POLRMTO00411 1230 aaKnown RBP21.29■■□□□ 1
USE1-201ENST00000263897 A1BGP04217 495 aa21.29■■□□□ 1
USE1-201ENST00000263897 USP16Q9Y5T5 823 aa21.29■■□□□ 1
USE1-201ENST00000263897 PXDNLA1KZ92 1463 aa21.28■■□□□ 1
USE1-201ENST00000263897 DLG5Q8TDM6 1919 aa21.28■■□□□ 1
USE1-201ENST00000263897 ZEB1P37275 1124 aaPredicted RBP21.28■■□□□ 1
USE1-201ENST00000263897 IL6STP40189 918 aaPredicted RBP21.28■■□□□ 1
USE1-201ENST00000263897 MAPK8IP3Q9UPT6 1336 aa21.28■■□□□ 1
USE1-201ENST00000263897 SNRPA1P09661 255 aaKnown RBP21.27■■□□□ 1
USE1-201ENST00000263897 DPEP1P16444 411 aa21.27■■□□□ 1
USE1-201ENST00000263897 NFIXQ14938 502 aa21.27■■□□□ 1
USE1-201ENST00000263897 MIS18AQ9NYP9 233 aa21.27■■□□□ 1
USE1-201ENST00000263897 N4BP2Q86UW6 1770 aaPredicted RBP21.26■□□□□ 0.99
USE1-201ENST00000263897 PRAMEF22A3QJZ6 481 aa21.25■□□□□ 0.99
USE1-201ENST00000263897 KCNA3P22001 575 aa21.25■□□□□ 0.99
USE1-201ENST00000263897 PNISRQ8TF01 805 aaKnown RBP21.25■□□□□ 0.99
USE1-201ENST00000263897 KIAA1551Q9HCM1 1747 aa21.25■□□□□ 0.99
USE1-201ENST00000263897 TBC1D2BQ9UPU7 963 aa21.25■□□□□ 0.99
USE1-201ENST00000263897 ZNF330Q9Y3S2 320 aaPredicted RBP21.25■□□□□ 0.99
USE1-201ENST00000263897 GOLGB1Q14789 3259 aaKnown RBP21.24■□□□□ 0.99
USE1-201ENST00000263897 NPM2Q86SE8 214 aaKnown RBP21.24■□□□□ 0.99
USE1-201ENST00000263897 SERPINB2P05120 415 aa21.23■□□□□ 0.99
USE1-201ENST00000263897 THUMPD2Q9BTF0 503 aaKnown RBP21.23■□□□□ 0.99
USE1-201ENST00000263897 PRKRIP1Q9H875 184 aaPredicted RBP21.23■□□□□ 0.99
USE1-201ENST00000263897 BCS1LQ9Y276 419 aa21.23■□□□□ 0.99
USE1-201ENST00000263897 RIPK4P57078 832 aa21.22■□□□□ 0.99
USE1-201ENST00000263897 BICDL1Q6ZP65 573 aa21.21■□□□□ 0.99
USE1-201ENST00000263897 PIM2Q9P1W9 311 aa21.21■□□□□ 0.99
USE1-201ENST00000263897 TMPOP42166 694 aaKnown RBP21.2■□□□□ 0.98
USE1-201ENST00000263897 PIP4K2AP48426 406 aaPredicted RBP21.2■□□□□ 0.98
USE1-201ENST00000263897 TBC1D9BQ66K14 1250 aa21.2■□□□□ 0.98
USE1-201ENST00000263897 AFDNP55196 1824 aaKnown RBP21.2■□□□□ 0.98
USE1-201ENST00000263897 CAMTA2O94983 1202 aa21.19■□□□□ 0.98
USE1-201ENST00000263897 DZIP3Q86Y13 1208 aaKnown RBP21.19■□□□□ 0.98
USE1-201ENST00000263897 NBPF26B4DH59 902 aa21.18■□□□□ 0.98
USE1-201ENST00000263897 GIGYF1O75420 1035 aaPredicted RBP21.18■□□□□ 0.98
USE1-201ENST00000263897 CHRNA5P30532 468 aa21.18■□□□□ 0.98
USE1-201ENST00000263897 EIF4A1P60842 406 aaKnown RBP21.18■□□□□ 0.98
USE1-201ENST00000263897 NBPF10Q6P3W6 841 aaKnown RBP21.18■□□□□ 0.98
USE1-201ENST00000263897 NBPF15Q8N660 670 aa21.18■□□□□ 0.98
USE1-201ENST00000263897 BRCA1P38398 1863 aaKnown RBP21.18■□□□□ 0.98
USE1-201ENST00000263897 WDR43Q15061 677 aaKnown RBP eCLIP21.17■□□□□ 0.98
USE1-201ENST00000263897 ADAMTS8Q9UP79 889 aa21.17■□□□□ 0.98
USE1-201ENST00000263897 NRXN2Q9P2S2 1712 aa21.17■□□□□ 0.98
USE1-201ENST00000263897 DALRD3Q5D0E6 543 aaKnown RBP21.16■□□□□ 0.98
USE1-201ENST00000263897 ARHGAP27Q6ZUM4 889 aa21.16■□□□□ 0.98
USE1-201ENST00000263897 CCDC146Q8IYE0 955 aa21.16■□□□□ 0.98
USE1-201ENST00000263897 RUNDC1Q96C34 613 aa21.16■□□□□ 0.98
USE1-201ENST00000263897 KDM3BQ7LBC6 1761 aa21.15■□□□□ 0.98
USE1-201ENST00000263897 LMOD3Q0VAK6 560 aa21.15■□□□□ 0.98
USE1-201ENST00000263897 CLEC4GQ6UXB4 293 aa21.15■□□□□ 0.98
USE1-201ENST00000263897 SETDB2Q96T68 719 aa21.15■□□□□ 0.98
USE1-201ENST00000263897 RRP7AQ9Y3A4 280 aaKnown RBP21.14■□□□□ 0.97
USE1-201ENST00000263897 SCN7AQ01118 1682 aa21.13■□□□□ 0.97
USE1-201ENST00000263897 NEUROD2Q15784 382 aa21.13■□□□□ 0.97
USE1-201ENST00000263897 BABAM1Q9NWV8 329 aa21.13■□□□□ 0.97
USE1-201ENST00000263897 CARMIL3Q8ND23 1372 aa21.12■□□□□ 0.97
USE1-201ENST00000263897 TSPYL4Q9UJ04 414 aa21.12■□□□□ 0.97
USE1-201ENST00000263897 ARFGEF1Q9Y6D6 1849 aa21.12■□□□□ 0.97
USE1-201ENST00000263897 ATP10DQ9P241 1426 aa21.12■□□□□ 0.97
USE1-201ENST00000263897 ADCY9O60503 1353 aa21.11■□□□□ 0.97
USE1-201ENST00000263897 H0YIN7 160 aa21.11■□□□□ 0.97
USE1-201ENST00000263897 RGL2O15211 777 aa21.11■□□□□ 0.97
USE1-201ENST00000263897 PRR5LQ6MZQ0 368 aa21.11■□□□□ 0.97
USE1-201ENST00000263897 C2CD5Q86YS7 1000 aa21.11■□□□□ 0.97
USE1-201ENST00000263897 BRIP1Q9BX63 1249 aa21.11■□□□□ 0.97
USE1-201ENST00000263897 ZNF652Q9Y2D9 606 aa21.11■□□□□ 0.97
USE1-201ENST00000263897 TRIM35Q9UPQ4 493 aa21.1■□□□□ 0.97
USE1-201ENST00000263897 PDE6BP35913 854 aa21.09■□□□□ 0.97
USE1-201ENST00000263897 CCDC24Q8N4L8 307 aa21.09■□□□□ 0.97
USE1-201ENST00000263897 PDZRN3Q9UPQ7 1066 aa21.09■□□□□ 0.97
USE1-201ENST00000263897 LAMB4A4D0S4 1761 aa21.08■□□□□ 0.97
USE1-201ENST00000263897 BCORQ6W2J9 1755 aa21.08■□□□□ 0.97
USE1-201ENST00000263897 NGEFQ8N5V2 710 aa21.08■□□□□ 0.97
USE1-201ENST00000263897 TTLL6Q8N841 843 aa21.08■□□□□ 0.97
USE1-201ENST00000263897 CNBD1Q8NA66 436 aa21.08■□□□□ 0.97
USE1-201ENST00000263897 ZNF316A6NFI3 1004 aaPredicted RBP21.07■□□□□ 0.96
USE1-201ENST00000263897 CHL1O00533 1208 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms