RNA–Protein interactions for RNA: ENST00000258909.13

TM6SF1-201, Transcript of transmembrane 6 superfamily member 1, humanhuman

TSL 1 (best)

Gene TM6SF1, Length 1,469 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM6SF1-201ENST00000258909 NUDCQ9Y266 331 aa25.47■■□□□ 1.67
TM6SF1-201ENST00000258909 CANXP27824 592 aaKnown RBP25.47■■□□□ 1.67
TM6SF1-201ENST00000258909 SIPA1L3O60292 1781 aaPredicted RBP25.46■■□□□ 1.67
TM6SF1-201ENST00000258909 ZNF496Q96IT1 587 aaPredicted RBP25.46■■□□□ 1.67
TM6SF1-201ENST00000258909 COL15A1P39059 1388 aa25.45■■□□□ 1.66
TM6SF1-201ENST00000258909 ZNF790Q6PG37 636 aa25.45■■□□□ 1.66
TM6SF1-201ENST00000258909 ZNF526Q8TF50 670 aaPredicted RBP25.45■■□□□ 1.66
TM6SF1-201ENST00000258909 TM4SF1P30408 202 aa25.44■■□□□ 1.66
TM6SF1-201ENST00000258909 POLRMTO00411 1230 aaKnown RBP25.43■■□□□ 1.66
TM6SF1-201ENST00000258909 NARFQ9UHQ1 456 aa25.43■■□□□ 1.66
TM6SF1-201ENST00000258909 ADCY9O60503 1353 aa25.42■■□□□ 1.66
TM6SF1-201ENST00000258909 FCHSD2O94868 740 aa25.42■■□□□ 1.66
TM6SF1-201ENST00000258909 KCNA3P22001 575 aa25.42■■□□□ 1.66
TM6SF1-201ENST00000258909 BRCA1P38398 1863 aaKnown RBP25.42■■□□□ 1.66
TM6SF1-201ENST00000258909 CEMIPQ8WUJ3 1361 aa25.42■■□□□ 1.66
TM6SF1-201ENST00000258909 HEG1Q9ULI3 1381 aa25.42■■□□□ 1.66
TM6SF1-201ENST00000258909 KCNQ3O43525 872 aa25.41■■□□□ 1.66
TM6SF1-201ENST00000258909 STARD3NLO95772 234 aa25.41■■□□□ 1.66
TM6SF1-201ENST00000258909 SENP3-EIF4A1A0A087X0R7 540 aa25.4■■□□□ 1.66
TM6SF1-201ENST00000258909 BCL2L12Q9HB09 334 aa25.4■■□□□ 1.66
TM6SF1-201ENST00000258909 BTBD11A6QL63 1104 aa25.4■■□□□ 1.66
TM6SF1-201ENST00000258909 CHRNA5P30532 468 aa25.4■■□□□ 1.66
TM6SF1-201ENST00000258909 NFIXQ14938 502 aa25.4■■□□□ 1.66
TM6SF1-201ENST00000258909 ARHGAP27Q6ZUM4 889 aa25.4■■□□□ 1.66
TM6SF1-201ENST00000258909 GPBP1L1Q9HC44 474 aaPredicted RBP25.4■■□□□ 1.66
TM6SF1-201ENST00000258909 AFDNP55196 1824 aaKnown RBP25.39■■□□□ 1.65
TM6SF1-201ENST00000258909 MCM10Q7L590 875 aa25.39■■□□□ 1.65
TM6SF1-201ENST00000258909 ZNF330Q9Y3S2 320 aaPredicted RBP25.39■■□□□ 1.65
TM6SF1-201ENST00000258909 EIF5P55010 431 aaKnown RBP25.38■■□□□ 1.65
TM6SF1-201ENST00000258909 FMNL2Q96PY5 1086 aa25.38■■□□□ 1.65
TM6SF1-201ENST00000258909 DCTN1Q14203 1278 aa25.37■■□□□ 1.65
TM6SF1-201ENST00000258909 PIM2Q9P1W9 311 aa25.37■■□□□ 1.65
TM6SF1-201ENST00000258909 RTF1Q92541 710 aaKnown RBP25.36■■□□□ 1.65
TM6SF1-201ENST00000258909 A1BGP04217 495 aa25.35■■□□□ 1.65
TM6SF1-201ENST00000258909 BICDL1Q6ZP65 573 aa25.35■■□□□ 1.65
TM6SF1-201ENST00000258909 TEX13AQ9BXU3 409 aaPredicted RBP25.35■■□□□ 1.65
TM6SF1-201ENST00000258909 SERPINB2P05120 415 aa25.34■■□□□ 1.65
TM6SF1-201ENST00000258909 DALRD3Q5D0E6 543 aaKnown RBP25.34■■□□□ 1.65
TM6SF1-201ENST00000258909 TBC1D2BQ9UPU7 963 aa25.34■■□□□ 1.65
TM6SF1-201ENST00000258909 ARFGEF1Q9Y6D6 1849 aa25.33■■□□□ 1.65
TM6SF1-201ENST00000258909 A0A087WZG4 1122 aa25.32■■□□□ 1.64
TM6SF1-201ENST00000258909 PRAMEF22A3QJZ6 481 aa25.32■■□□□ 1.64
TM6SF1-201ENST00000258909 NRXN2Q9P2S2 1712 aa25.31■■□□□ 1.64
TM6SF1-201ENST00000258909 PIP4K2AP48426 406 aaPredicted RBP25.31■■□□□ 1.64
TM6SF1-201ENST00000258909 USP16Q9Y5T5 823 aa25.31■■□□□ 1.64
TM6SF1-201ENST00000258909 IL6STP40189 918 aaPredicted RBP25.3■■□□□ 1.64
TM6SF1-201ENST00000258909 TBC1D9BQ66K14 1250 aa25.3■■□□□ 1.64
TM6SF1-201ENST00000258909 CARMIL3Q8ND23 1372 aa25.28■■□□□ 1.64
TM6SF1-201ENST00000258909 MIS18AQ9NYP9 233 aa25.28■■□□□ 1.64
TM6SF1-201ENST00000258909 SCN7AQ01118 1682 aa25.27■■□□□ 1.64
TM6SF1-201ENST00000258909 CEP350Q5VT06 3117 aa25.27■■□□□ 1.64
TM6SF1-201ENST00000258909 DLG5Q8TDM6 1919 aa25.27■■□□□ 1.64
TM6SF1-201ENST00000258909 HTATSF1O43719 755 aaKnown RBP25.27■■□□□ 1.64
TM6SF1-201ENST00000258909 NPM2Q86SE8 214 aaKnown RBP25.27■■□□□ 1.64
TM6SF1-201ENST00000258909 C9orf131Q5VYM1 1079 aa25.26■■□□□ 1.63
TM6SF1-201ENST00000258909 CCDC24Q8N4L8 307 aa25.26■■□□□ 1.63
TM6SF1-201ENST00000258909 NEFMP07197 916 aa25.25■■□□□ 1.63
TM6SF1-201ENST00000258909 SNRPA1P09661 255 aaKnown RBP25.25■■□□□ 1.63
TM6SF1-201ENST00000258909 C2CD5Q86YS7 1000 aa25.24■■□□□ 1.63
TM6SF1-201ENST00000258909 CAMTA2O94983 1202 aa25.23■■□□□ 1.63
TM6SF1-201ENST00000258909 TAF7Q15545 349 aaPredicted RBP25.23■■□□□ 1.63
TM6SF1-201ENST00000258909 DZIP3Q86Y13 1208 aaKnown RBP25.23■■□□□ 1.63
TM6SF1-201ENST00000258909 PLEKHF1Q96S99 279 aa25.23■■□□□ 1.63
TM6SF1-201ENST00000258909 KIF3CO14782 793 aa25.22■■□□□ 1.63
TM6SF1-201ENST00000258909 DLEC1Q9Y238 1755 aa25.22■■□□□ 1.63
TM6SF1-201ENST00000258909 ANKRD31Q8N7Z5 1873 aa25.21■■□□□ 1.63
TM6SF1-201ENST00000258909 H0YIN7 160 aa25.21■■□□□ 1.63
TM6SF1-201ENST00000258909 THUMPD2Q9BTF0 503 aaKnown RBP25.21■■□□□ 1.63
TM6SF1-201ENST00000258909 RNF181Q9P0P0 153 aa25.21■■□□□ 1.63
TM6SF1-201ENST00000258909 SBF1O95248 1867 aa25.2■■□□□ 1.62
TM6SF1-201ENST00000258909 DDX10Q13206 875 aaKnown RBP25.2■■□□□ 1.62
TM6SF1-201ENST00000258909 PRR5LQ6MZQ0 368 aa25.2■■□□□ 1.62
TM6SF1-201ENST00000258909 SETDB2Q96T68 719 aa25.2■■□□□ 1.62
TM6SF1-201ENST00000258909 BCORQ6W2J9 1755 aa25.2■■□□□ 1.62
TM6SF1-201ENST00000258909 NBPF26B4DH59 902 aa25.19■■□□□ 1.62
TM6SF1-201ENST00000258909 RASSF7Q02833 373 aa25.19■■□□□ 1.62
TM6SF1-201ENST00000258909 NFE2L2Q16236 605 aa25.19■■□□□ 1.62
TM6SF1-201ENST00000258909 NBPF10Q6P3W6 841 aaKnown RBP25.19■■□□□ 1.62
TM6SF1-201ENST00000258909 NBPF15Q8N660 670 aa25.19■■□□□ 1.62
TM6SF1-201ENST00000258909 TTLL6Q8N841 843 aa25.19■■□□□ 1.62
TM6SF1-201ENST00000258909 NMRK2Q9NPI5 230 aa25.18■■□□□ 1.62
TM6SF1-201ENST00000258909 MAPK8IP3Q9UPT6 1336 aa25.17■■□□□ 1.62
TM6SF1-201ENST00000258909 NPHP1O15259 732 aa25.16■■□□□ 1.62
TM6SF1-201ENST00000258909 ZNF622Q969S3 477 aaKnown RBP eCLIP25.16■■□□□ 1.62
TM6SF1-201ENST00000258909 BRIP1Q9BX63 1249 aa25.16■■□□□ 1.62
TM6SF1-201ENST00000258909 RALBP1Q15311 655 aa25.15■■□□□ 1.62
TM6SF1-201ENST00000258909 CNBD1Q8NA66 436 aa25.15■■□□□ 1.62
TM6SF1-201ENST00000258909 COL11A2P13942 1736 aaPredicted RBP25.15■■□□□ 1.62
TM6SF1-201ENST00000258909 KDM3BQ7LBC6 1761 aa25.15■■□□□ 1.62
TM6SF1-201ENST00000258909 PDE6BP35913 854 aa25.15■■□□□ 1.62
TM6SF1-201ENST00000258909 ZNF219Q9P2Y4 722 aaPredicted RBP25.15■■□□□ 1.62
TM6SF1-201ENST00000258909 PNNQ9H307 717 aaKnown RBP25.14■■□□□ 1.61
TM6SF1-201ENST00000258909 PRELPP51888 382 aa25.13■■□□□ 1.61
TM6SF1-201ENST00000258909 PNISRQ8TF01 805 aaKnown RBP25.13■■□□□ 1.61
TM6SF1-201ENST00000258909 LAMB4A4D0S4 1761 aa25.12■■□□□ 1.61
TM6SF1-201ENST00000258909 HSPA6P17066 643 aa25.12■■□□□ 1.61
TM6SF1-201ENST00000258909 CCDC88AQ3V6T2 1871 aa25.12■■□□□ 1.61
TM6SF1-201ENST00000258909 EIF4A1P60842 406 aaKnown RBP25.11■■□□□ 1.61
TM6SF1-201ENST00000258909 ST5P78524 1137 aa25.11■■□□□ 1.61
TM6SF1-201ENST00000258909 CLEC4GQ6UXB4 293 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms