RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 CCDC191Q8NCU4 936 aa21.82■■□□□ 1.08
SMARCC1-201ENST00000254480 SCLT1Q96NL6 688 aa21.82■■□□□ 1.08
SMARCC1-201ENST00000254480 TFIP11Q9UBB9 837 aaKnown RBP21.82■■□□□ 1.08
SMARCC1-201ENST00000254480 MAP3K12Q12852 859 aa21.82■■□□□ 1.08
SMARCC1-201ENST00000254480 ZNF444Q8N0Y2 327 aaPredicted RBP21.82■■□□□ 1.08
SMARCC1-201ENST00000254480 RPGRQ92834 1020 aaKnown RBP21.82■■□□□ 1.08
SMARCC1-201ENST00000254480 ISM2Q6H9L7 571 aa21.81■■□□□ 1.08
SMARCC1-201ENST00000254480 SLC12A7Q9Y666 1083 aa21.81■■□□□ 1.08
SMARCC1-201ENST00000254480 IFIT3O14879 490 aaKnown RBP21.81■■□□□ 1.08
SMARCC1-201ENST00000254480 HMGN5P82970 282 aaKnown RBP21.81■■□□□ 1.08
SMARCC1-201ENST00000254480 CPLX3Q8WVH0 158 aa21.81■■□□□ 1.08
SMARCC1-201ENST00000254480 ANKRD18BA2A2Z9 1011 aa21.8■■□□□ 1.08
SMARCC1-201ENST00000254480 GOLGA8BA8MQT2 603 aa21.8■■□□□ 1.08
SMARCC1-201ENST00000254480 TTLL12Q14166 644 aaPredicted RBP21.8■■□□□ 1.08
SMARCC1-201ENST00000254480 KRT28Q7Z3Y7 464 aa21.8■■□□□ 1.08
SMARCC1-201ENST00000254480 SLC5A1P13866 664 aa21.8■■□□□ 1.08
SMARCC1-201ENST00000254480 CAMSAP2Q08AD1 1489 aa21.8■■□□□ 1.08
SMARCC1-201ENST00000254480 BIN1O00499 593 aa21.8■■□□□ 1.08
SMARCC1-201ENST00000254480 AMOTQ4VCS5 1084 aa21.8■■□□□ 1.08
SMARCC1-201ENST00000254480 UBE3BQ7Z3V4 1068 aa21.8■■□□□ 1.08
SMARCC1-201ENST00000254480 DNAJC5BQ9UF47 199 aa21.8■■□□□ 1.08
SMARCC1-201ENST00000254480 ARHGAP29Q52LW3 1261 aa21.79■■□□□ 1.08
SMARCC1-201ENST00000254480 WWC3Q9ULE0 1092 aa21.79■■□□□ 1.08
SMARCC1-201ENST00000254480 CWC15Q9P013 229 aaKnown RBP21.79■■□□□ 1.08
SMARCC1-201ENST00000254480 CEP131Q9UPN4 1083 aa21.79■■□□□ 1.08
SMARCC1-201ENST00000254480 CCDC141Q6ZP82 1450 aa21.79■■□□□ 1.08
SMARCC1-201ENST00000254480 CTCFLQ8NI51 663 aaPredicted RBP21.79■■□□□ 1.08
SMARCC1-201ENST00000254480 SMTNL1A8MU46 457 aa21.79■■□□□ 1.08
SMARCC1-201ENST00000254480 TOP2BQ02880 1626 aa21.78■■□□□ 1.08
SMARCC1-201ENST00000254480 GOLGA8AA7E2F4 631 aa21.78■■□□□ 1.08
SMARCC1-201ENST00000254480 EXOC5O00471 708 aa21.78■■□□□ 1.08
SMARCC1-201ENST00000254480 ALDH1L2Q3SY69 923 aa21.78■■□□□ 1.08
SMARCC1-201ENST00000254480 DBF4Q9UBU7 674 aaPredicted RBP21.78■■□□□ 1.08
SMARCC1-201ENST00000254480 PI4KAP2A4QPH2 592 aa21.78■■□□□ 1.08
SMARCC1-201ENST00000254480 PI4KAP1Q8N8J0 262 aa21.78■■□□□ 1.08
SMARCC1-201ENST00000254480 CCDC102AQ96A19 550 aa21.78■■□□□ 1.08
SMARCC1-201ENST00000254480 MAGI1Q96QZ7 1491 aaPredicted RBP21.77■■□□□ 1.08
SMARCC1-201ENST00000254480 NKTRP30414 1462 aaKnown RBP21.77■■□□□ 1.08
SMARCC1-201ENST00000254480 NLRP5P59047 1200 aa21.77■■□□□ 1.08
SMARCC1-201ENST00000254480 LDHAL6AQ6ZMR3 332 aa21.77■■□□□ 1.08
SMARCC1-201ENST00000254480 PAXIP1Q6ZW49 1069 aaPredicted RBP21.77■■□□□ 1.08
SMARCC1-201ENST00000254480 MBIPQ9NS73 344 aa21.77■■□□□ 1.08
SMARCC1-201ENST00000254480 IQSEC3Q9UPP2 1182 aaPredicted RBP21.77■■□□□ 1.08
SMARCC1-201ENST00000254480 TNNT1P13805 278 aa21.76■■□□□ 1.07
SMARCC1-201ENST00000254480 NEBLO76041 1014 aa21.76■■□□□ 1.07
SMARCC1-201ENST00000254480 PCF11O94913 1555 aaKnown RBP21.76■■□□□ 1.07
SMARCC1-201ENST00000254480 HYPKQ9NX55 129 aa21.76■■□□□ 1.07
SMARCC1-201ENST00000254480 NOS1P29475 1434 aa21.75■■□□□ 1.07
SMARCC1-201ENST00000254480 IQCA1Q86XH1 822 aa21.75■■□□□ 1.07
SMARCC1-201ENST00000254480 ACSBG1Q96GR2 724 aa21.75■■□□□ 1.07
SMARCC1-201ENST00000254480 CIZ1Q9ULV3 898 aaPredicted RBP21.75■■□□□ 1.07
SMARCC1-201ENST00000254480 ADGRL1O94910 1474 aa21.75■■□□□ 1.07
SMARCC1-201ENST00000254480 ERICH4A6NGS2 130 aa21.75■■□□□ 1.07
SMARCC1-201ENST00000254480 SSRP1Q08945 709 aaKnown RBP21.74■■□□□ 1.07
SMARCC1-201ENST00000254480 PPP1R42Q7Z4L9 355 aa21.74■■□□□ 1.07
SMARCC1-201ENST00000254480 MICU3Q86XE3 530 aa21.74■■□□□ 1.07
SMARCC1-201ENST00000254480 TAF4BQ92750 862 aa21.74■■□□□ 1.07
SMARCC1-201ENST00000254480 ZNF287Q9HBT7 754 aa21.74■■□□□ 1.07
SMARCC1-201ENST00000254480 TRMT1Q9NXH9 659 aaKnown RBP21.74■■□□□ 1.07
SMARCC1-201ENST00000254480 ESPNB1AK53 854 aa21.73■■□□□ 1.07
SMARCC1-201ENST00000254480 ABCC5O15440 1437 aa21.73■■□□□ 1.07
SMARCC1-201ENST00000254480 SPTY2D1Q68D10 685 aaPredicted RBP21.73■■□□□ 1.07
SMARCC1-201ENST00000254480 TBC1D2Q9BYX2 928 aa21.73■■□□□ 1.07
SMARCC1-201ENST00000254480 IGHDP01880 384 aa21.73■■□□□ 1.07
SMARCC1-201ENST00000254480 GJB2P29033 226 aa21.73■■□□□ 1.07
SMARCC1-201ENST00000254480 ANKRD24Q8TF21 1146 aa21.73■■□□□ 1.07
SMARCC1-201ENST00000254480 LRRC2Q9BYS8 371 aa21.73■■□□□ 1.07
SMARCC1-201ENST00000254480 TBC1D9Q6ZT07 1266 aa21.73■■□□□ 1.07
SMARCC1-201ENST00000254480 ACEP12821 1306 aa21.72■■□□□ 1.07
SMARCC1-201ENST00000254480 SLC39A6Q13433 755 aa21.72■■□□□ 1.07
SMARCC1-201ENST00000254480 CACNA2D4Q7Z3S7 1137 aa21.72■■□□□ 1.07
SMARCC1-201ENST00000254480 ZNF622Q969S3 477 aaKnown RBP eCLIP21.72■■□□□ 1.071e-10■■□□□ 12.1
SMARCC1-201ENST00000254480 TCEANC2Q96MN5 208 aa21.72■■□□□ 1.07
SMARCC1-201ENST00000254480 MTERF4Q7Z6M4 381 aaKnown RBP21.72■■□□□ 1.07
SMARCC1-201ENST00000254480 ERLIN1O75477 346 aa21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 HSP90AB3PQ58FF7 597 aa21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 ZNF397Q8NF99 534 aaPredicted RBP21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 DISP3Q9P2K9 1392 aa21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 DDX46Q7L014 1031 aaKnown RBP21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 USP25Q9UHP3 1055 aa21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 LIMCH1Q9UPQ0 1083 aa21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 CCDC194A0A1B0GVG4 234 aa21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 FSIP1Q8NA03 581 aa21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 CNNM3Q8NE01 707 aa21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 RBM27Q9P2N5 1060 aaKnown RBP21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 TNPO1Q92973 898 aaKnown RBP21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 TNIP1Q15025 636 aa21.71■■□□□ 1.07
SMARCC1-201ENST00000254480 SFPQP23246 707 aaKnown RBP eCLIP21.7■■□□□ 1.074e-6■□□□□ 11
SMARCC1-201ENST00000254480 CCDC113Q9H0I3 377 aa21.7■■□□□ 1.07
SMARCC1-201ENST00000254480 MACROD2A1Z1Q3 448 aa21.7■■□□□ 1.06
SMARCC1-201ENST00000254480 TMEM67Q5HYA8 995 aa21.7■■□□□ 1.06
SMARCC1-201ENST00000254480 CWC25Q9NXE8 425 aaPredicted RBP21.7■■□□□ 1.06
SMARCC1-201ENST00000254480 USP16Q9Y5T5 823 aa21.7■■□□□ 1.06
SMARCC1-201ENST00000254480 PTPN23Q9H3S7 1636 aa21.7■■□□□ 1.06
SMARCC1-201ENST00000254480 F8W031 263 aaPredicted RBP21.69■■□□□ 1.06
SMARCC1-201ENST00000254480 CCDC183Q5T5S1 534 aa21.69■■□□□ 1.06
SMARCC1-201ENST00000254480 CCDC196A0A1B0GTZ2 297 aa21.69■■□□□ 1.06
SMARCC1-201ENST00000254480 CATIPQ7Z7H3 387 aa21.69■■□□□ 1.06
SMARCC1-201ENST00000254480 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.69■■□□□ 1.06
SMARCC1-201ENST00000254480 ECHDC1Q9NTX5 307 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms