RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 ZBTB1Q9Y2K1 713 aa28.23■■■□□ 2.11
NEDD8-201ENST00000250495 ARHGAP27Q6ZUM4 889 aa28.22■■■□□ 2.11
NEDD8-201ENST00000250495 PIM2Q9P1W9 311 aa28.22■■■□□ 2.11
NEDD8-201ENST00000250495 POLRMTO00411 1230 aaKnown RBP28.21■■■□□ 2.11
NEDD8-201ENST00000250495 KCNA3P22001 575 aa28.21■■■□□ 2.11
NEDD8-201ENST00000250495 ZNF790Q6PG37 636 aa28.21■■■□□ 2.11
NEDD8-201ENST00000250495 ZNF526Q8TF50 670 aaPredicted RBP28.21■■■□□ 2.11
NEDD8-201ENST00000250495 TEX13AQ9BXU3 409 aaPredicted RBP28.21■■■□□ 2.11
NEDD8-201ENST00000250495 PRKAR2BP31323 418 aa28.2■■■□□ 2.1
NEDD8-201ENST00000250495 COL15A1P39059 1388 aa28.2■■■□□ 2.1
NEDD8-201ENST00000250495 CANXP27824 592 aaKnown RBP28.19■■■□□ 2.1
NEDD8-201ENST00000250495 PPP2R1AP30153 589 aa28.19■■■□□ 2.1
NEDD8-201ENST00000250495 PHACTR3Q96KR7 559 aa28.19■■■□□ 2.1
NEDD8-201ENST00000250495 RSPH6AQ9H0K4 717 aa28.19■■■□□ 2.1
NEDD8-201ENST00000250495 ZNF496Q96IT1 587 aaPredicted RBP28.18■■■□□ 2.1
NEDD8-201ENST00000250495 UBR2Q8IWV8 1755 aa28.18■■■□□ 2.1
NEDD8-201ENST00000250495 A0A087WZG4 1122 aa28.17■■■□□ 2.1
NEDD8-201ENST00000250495 DALRD3Q5D0E6 543 aaKnown RBP28.17■■■□□ 2.1
NEDD8-201ENST00000250495 HEG1Q9ULI3 1381 aa28.16■■■□□ 2.1
NEDD8-201ENST00000250495 U2AF1L5P0DN76 240 aaPredicted RBP28.16■■■□□ 2.1
NEDD8-201ENST00000250495 U2AF1Q01081 240 aaKnown RBP eCLIP28.16■■■□□ 2.1
NEDD8-201ENST00000250495 NFIXQ14938 502 aa28.16■■■□□ 2.1
NEDD8-201ENST00000250495 BRCA1P38398 1863 aaKnown RBP28.16■■■□□ 2.1
NEDD8-201ENST00000250495 FMNL2Q96PY5 1086 aa28.15■■■□□ 2.1
NEDD8-201ENST00000250495 CEMIPQ8WUJ3 1361 aa28.14■■■□□ 2.1
NEDD8-201ENST00000250495 EIF5P55010 431 aaKnown RBP28.14■■■□□ 2.1
NEDD8-201ENST00000250495 BCL2L12Q9HB09 334 aa28.14■■■□□ 2.1
NEDD8-201ENST00000250495 BTBD11A6QL63 1104 aa28.13■■■□□ 2.09
NEDD8-201ENST00000250495 CHRNA5P30532 468 aa28.13■■■□□ 2.09
NEDD8-201ENST00000250495 SERPINB2P05120 415 aa28.12■■■□□ 2.09
NEDD8-201ENST00000250495 RTF1Q92541 710 aaKnown RBP28.12■■■□□ 2.09
NEDD8-201ENST00000250495 SIPA1L3O60292 1781 aaPredicted RBP28.11■■■□□ 2.09
NEDD8-201ENST00000250495 ARFGEF1Q9Y6D6 1849 aa28.11■■■□□ 2.09
NEDD8-201ENST00000250495 NPM2Q86SE8 214 aaKnown RBP28.1■■■□□ 2.09
NEDD8-201ENST00000250495 IL6STP40189 918 aaPredicted RBP28.09■■■□□ 2.09
NEDD8-201ENST00000250495 AFDNP55196 1824 aaKnown RBP28.07■■■□□ 2.08
NEDD8-201ENST00000250495 KIF3CO14782 793 aa28.06■■■□□ 2.08
NEDD8-201ENST00000250495 KCNQ3O43525 872 aa28.06■■■□□ 2.08
NEDD8-201ENST00000250495 HTATSF1O43719 755 aaKnown RBP28.06■■■□□ 2.08
NEDD8-201ENST00000250495 C9orf131Q5VYM1 1079 aa28.06■■■□□ 2.08
NEDD8-201ENST00000250495 BICDL1Q6ZP65 573 aa28.06■■■□□ 2.08
NEDD8-201ENST00000250495 ZNF330Q9Y3S2 320 aaPredicted RBP28.06■■■□□ 2.08
NEDD8-201ENST00000250495 A1BGP04217 495 aa28.05■■■□□ 2.08
NEDD8-201ENST00000250495 TBC1D2BQ9UPU7 963 aa28.05■■■□□ 2.08
NEDD8-201ENST00000250495 NRXN2Q9P2S2 1712 aa28.04■■■□□ 2.08
NEDD8-201ENST00000250495 MCM10Q7L590 875 aa28.04■■■□□ 2.08
NEDD8-201ENST00000250495 H0YIN7 160 aa28.02■■■□□ 2.08
NEDD8-201ENST00000250495 NEFMP07197 916 aa28.02■■■□□ 2.08
NEDD8-201ENST00000250495 TBC1D9BQ66K14 1250 aa28.02■■■□□ 2.08
NEDD8-201ENST00000250495 HSPA6P17066 643 aa28.01■■■□□ 2.07
NEDD8-201ENST00000250495 C2CD5Q86YS7 1000 aa28.01■■■□□ 2.07
NEDD8-201ENST00000250495 USP16Q9Y5T5 823 aa28.01■■■□□ 2.07
NEDD8-201ENST00000250495 SNRPA1P09661 255 aaKnown RBP28■■■□□ 2.07
NEDD8-201ENST00000250495 TTLL6Q8N841 843 aa28■■■□□ 2.07
NEDD8-201ENST00000250495 PDZRN3Q9UPQ7 1066 aa28■■■□□ 2.07
NEDD8-201ENST00000250495 RNF181Q9P0P0 153 aa27.99■■■□□ 2.07
NEDD8-201ENST00000250495 DCTN1Q14203 1278 aa27.98■■■□□ 2.07
NEDD8-201ENST00000250495 SETDB2Q96T68 719 aa27.98■■■□□ 2.07
NEDD8-201ENST00000250495 TOMM70O94826 608 aa27.97■■■□□ 2.07
NEDD8-201ENST00000250495 TAF7Q15545 349 aaPredicted RBP27.97■■■□□ 2.07
NEDD8-201ENST00000250495 BRIP1Q9BX63 1249 aa27.97■■■□□ 2.07
NEDD8-201ENST00000250495 CAMTA2O94983 1202 aa27.96■■■□□ 2.07
NEDD8-201ENST00000250495 PDE6BP35913 854 aa27.96■■■□□ 2.07
NEDD8-201ENST00000250495 DZIP3Q86Y13 1208 aaKnown RBP27.96■■■□□ 2.07
NEDD8-201ENST00000250495 CARMIL3Q8ND23 1372 aa27.96■■■□□ 2.07
NEDD8-201ENST00000250495 NMRK2Q9NPI5 230 aa27.95■■■□□ 2.06
NEDD8-201ENST00000250495 KDM2BQ8NHM5 1336 aa27.94■■■□□ 2.06
NEDD8-201ENST00000250495 PRR5LQ6MZQ0 368 aa27.94■■■□□ 2.06
NEDD8-201ENST00000250495 PNNQ9H307 717 aaKnown RBP27.94■■■□□ 2.06
NEDD8-201ENST00000250495 SBF1O95248 1867 aa27.93■■■□□ 2.06
NEDD8-201ENST00000250495 PRAMEF22A3QJZ6 481 aa27.93■■■□□ 2.06
NEDD8-201ENST00000250495 SCN7AQ01118 1682 aa27.93■■■□□ 2.06
NEDD8-201ENST00000250495 DLEC1Q9Y238 1755 aa27.92■■■□□ 2.06
NEDD8-201ENST00000250495 NPHP1O15259 732 aa27.92■■■□□ 2.06
NEDD8-201ENST00000250495 CLEC4GQ6UXB4 293 aa27.92■■■□□ 2.06
NEDD8-201ENST00000250495 ZNF622Q969S3 477 aaKnown RBP eCLIP27.92■■■□□ 2.061e-16■□□□□ 9.9
NEDD8-201ENST00000250495 LMNB1P20700 586 aa27.91■■■□□ 2.06
NEDD8-201ENST00000250495 PIP4K2AP48426 406 aaPredicted RBP27.91■■■□□ 2.06
NEDD8-201ENST00000250495 CNBD1Q8NA66 436 aa27.91■■■□□ 2.06
NEDD8-201ENST00000250495 PNISRQ8TF01 805 aaKnown RBP27.91■■■□□ 2.06
NEDD8-201ENST00000250495 C16orf71Q8IYS4 520 aaPredicted RBP27.9■■■□□ 2.06
NEDD8-201ENST00000250495 ZNF652Q9Y2D9 606 aa27.9■■■□□ 2.06
NEDD8-201ENST00000250495 ZC3H4Q9UPT8 1303 aaKnown RBP27.9■■■□□ 2.06
NEDD8-201ENST00000250495 ST5P78524 1137 aa27.89■■■□□ 2.06
NEDD8-201ENST00000250495 RASSF7Q02833 373 aa27.89■■■□□ 2.06
NEDD8-201ENST00000250495 CCDC24Q8N4L8 307 aa27.89■■■□□ 2.06
NEDD8-201ENST00000250495 PLEKHF1Q96S99 279 aa27.89■■■□□ 2.06
NEDD8-201ENST00000250495 MIS18AQ9NYP9 233 aa27.88■■■□□ 2.05
NEDD8-201ENST00000250495 NFE2L2Q16236 605 aa27.87■■■□□ 2.05
NEDD8-201ENST00000250495 ANKRD31Q8N7Z5 1873 aa27.87■■■□□ 2.05
NEDD8-201ENST00000250495 NBPF26B4DH59 902 aa27.86■■■□□ 2.05
NEDD8-201ENST00000250495 RGL2O15211 777 aa27.86■■■□□ 2.05
NEDD8-201ENST00000250495 NBPF10Q6P3W6 841 aaKnown RBP27.86■■■□□ 2.05
NEDD8-201ENST00000250495 NBPF15Q8N660 670 aa27.86■■■□□ 2.05
NEDD8-201ENST00000250495 RBM46Q8TBY0 533 aaKnown RBP27.86■■■□□ 2.05
NEDD8-201ENST00000250495 APLP1P51693 650 aa27.85■■■□□ 2.05
NEDD8-201ENST00000250495 CNKSR1Q969H4 720 aa27.85■■■□□ 2.05
NEDD8-201ENST00000250495 RRAGCQ9HB90 399 aa27.85■■■□□ 2.05
NEDD8-201ENST00000250495 MAPK8IP3Q9UPT6 1336 aa27.85■■■□□ 2.05
NEDD8-201ENST00000250495 BCORQ6W2J9 1755 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms