RNA–Protein interactions for RNA: ENST00000248668.4

LRFN1-201, Transcript of leucine rich repeat and fibronectin type III domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRFN1, Length 3,381 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1-201ENST00000248668 C9orf78Q9NZ63 289 aaPredicted RBP19.32■□□□□ 0.68
LRFN1-201ENST00000248668 REC8O95072 547 aa19.32■□□□□ 0.68
LRFN1-201ENST00000248668 RABEP1Q15276 862 aa19.32■□□□□ 0.68
LRFN1-201ENST00000248668 NOL8Q76FK4 1167 aaKnown RBP19.32■□□□□ 0.68
LRFN1-201ENST00000248668 NFATC2IPQ8NCF5 419 aa19.32■□□□□ 0.68
LRFN1-201ENST00000248668 SSH3Q8TE77 659 aa19.32■□□□□ 0.68
LRFN1-201ENST00000248668 OSBPL3Q9H4L5 887 aa19.32■□□□□ 0.68
LRFN1-201ENST00000248668 ANO2Q9NQ90 1003 aa19.32■□□□□ 0.68
LRFN1-201ENST00000248668 SALL3Q9BXA9 1300 aa19.31■□□□□ 0.68
LRFN1-201ENST00000248668 DDIT3P35638 169 aa19.31■□□□□ 0.68
LRFN1-201ENST00000248668 PA2G4Q9UQ80 394 aaKnown RBP19.3■□□□□ 0.68
LRFN1-201ENST00000248668 TRAK2O60296 914 aa19.3■□□□□ 0.68
LRFN1-201ENST00000248668 SSFA2P28290 1259 aa19.3■□□□□ 0.68
LRFN1-201ENST00000248668 RHPN1Q8TCX5 695 aa19.3■□□□□ 0.68
LRFN1-201ENST00000248668 NCOA3Q9Y6Q9 1424 aa19.3■□□□□ 0.68
LRFN1-201ENST00000248668 HOXB7P09629 217 aa19.3■□□□□ 0.68
LRFN1-201ENST00000248668 SLIT3O75094 1523 aa19.29■□□□□ 0.68
LRFN1-201ENST00000248668 RGPD5Q99666 1765 aa19.29■□□□□ 0.68
LRFN1-201ENST00000248668 TATP17735 454 aaPredicted RBP19.29■□□□□ 0.68
LRFN1-201ENST00000248668 IL25Q9H293 177 aa19.28■□□□□ 0.68
LRFN1-201ENST00000248668 JARID2Q92833 1246 aaPredicted RBP19.28■□□□□ 0.68
LRFN1-201ENST00000248668 ESYT1Q9BSJ8 1104 aa19.28■□□□□ 0.68
LRFN1-201ENST00000248668 FAM43AQ8N2R8 423 aa19.27■□□□□ 0.68
LRFN1-201ENST00000248668 MED1Q15648 1581 aaPredicted RBP19.27■□□□□ 0.68
LRFN1-201ENST00000248668 CHMLP26374 656 aa19.27■□□□□ 0.68
LRFN1-201ENST00000248668 PALD1Q9ULE6 856 aa19.27■□□□□ 0.68
LRFN1-201ENST00000248668 CACNA1FO60840 1977 aa19.27■□□□□ 0.67
LRFN1-201ENST00000248668 MST1RQ04912 1400 aa19.26■□□□□ 0.67
LRFN1-201ENST00000248668 ZNF790Q6PG37 636 aa19.26■□□□□ 0.67
LRFN1-201ENST00000248668 ZGPATQ8N5A5 531 aaKnown RBP19.26■□□□□ 0.67
LRFN1-201ENST00000248668 NEK4P51957 841 aa19.26■□□□□ 0.67
LRFN1-201ENST00000248668 POLA2Q14181 598 aa19.26■□□□□ 0.67
LRFN1-201ENST00000248668 RAB3GAP1Q15042 981 aa19.26■□□□□ 0.67
LRFN1-201ENST00000248668 KSR2Q6VAB6 950 aa19.26■□□□□ 0.67
LRFN1-201ENST00000248668 NPHP3Q7Z494 1330 aa19.26■□□□□ 0.67
LRFN1-201ENST00000248668 PKP1Q13835 747 aa19.26■□□□□ 0.67
LRFN1-201ENST00000248668 PXDNLA1KZ92 1463 aa19.25■□□□□ 0.67
LRFN1-201ENST00000248668 PHKG2P15735 406 aa19.25■□□□□ 0.67
LRFN1-201ENST00000248668 FOXD4L5Q5VV16 416 aaPredicted RBP19.25■□□□□ 0.67
LRFN1-201ENST00000248668 RIC3Q7Z5B4 369 aa19.25■□□□□ 0.67
LRFN1-201ENST00000248668 FOXD4L4Q8WXT5 416 aaPredicted RBP19.25■□□□□ 0.67
LRFN1-201ENST00000248668 ZNF496Q96IT1 587 aaPredicted RBP19.25■□□□□ 0.67
LRFN1-201ENST00000248668 AK9Q5TCS8 1911 aa19.25■□□□□ 0.67
LRFN1-201ENST00000248668 ST18O60284 1047 aa19.24■□□□□ 0.67
LRFN1-201ENST00000248668 TRPM3Q9HCF6 1732 aaPredicted RBP19.24■□□□□ 0.67
LRFN1-201ENST00000248668 KIF1BPQ96EK5 621 aa19.24■□□□□ 0.67
LRFN1-201ENST00000248668 NAP1L5Q96NT1 182 aaPredicted RBP19.24■□□□□ 0.67
LRFN1-201ENST00000248668 SLC52A2Q9HAB3 445 aa19.24■□□□□ 0.67
LRFN1-201ENST00000248668 KDM3BQ7LBC6 1761 aa19.24■□□□□ 0.67
LRFN1-201ENST00000248668 SIL1Q9H173 461 aa19.24■□□□□ 0.67
LRFN1-201ENST00000248668 RRAGDQ9NQL2 400 aaPredicted RBP19.24■□□□□ 0.67
LRFN1-201ENST00000248668 LMO7Q8WWI1 1683 aa19.24■□□□□ 0.67
LRFN1-201ENST00000248668 CADPS2Q86UW7 1296 aa19.23■□□□□ 0.67
LRFN1-201ENST00000248668 UPF3BQ9BZI7 483 aaKnown RBP19.23■□□□□ 0.67
LRFN1-201ENST00000248668 STAP2Q9UGK3 403 aa19.23■□□□□ 0.67
LRFN1-201ENST00000248668 CIZ1Q9ULV3 898 aaPredicted RBP19.23■□□□□ 0.67
LRFN1-201ENST00000248668 SPG7Q9UQ90 795 aa19.23■□□□□ 0.67
LRFN1-201ENST00000248668 MEGF6O75095 1541 aa19.23■□□□□ 0.67
LRFN1-201ENST00000248668 CYP27B1O15528 508 aa19.23■□□□□ 0.67
LRFN1-201ENST00000248668 KLHDC4Q8TBB5 520 aa19.23■□□□□ 0.67
LRFN1-201ENST00000248668 XAGE3Q8WTP9 111 aa19.23■□□□□ 0.67
LRFN1-201ENST00000248668 CHMP4AQ9BY43 222 aa19.23■□□□□ 0.67
LRFN1-201ENST00000248668 USP16Q9Y5T5 823 aa19.23■□□□□ 0.67
LRFN1-201ENST00000248668 DDX11L8A8MPP1 907 aa19.22■□□□□ 0.67
LRFN1-201ENST00000248668 RAB11FIP3O75154 756 aa19.22■□□□□ 0.67
LRFN1-201ENST00000248668 SUCLG2Q96I99 432 aa19.22■□□□□ 0.67
LRFN1-201ENST00000248668 GBP4Q96PP9 640 aa19.22■□□□□ 0.67
LRFN1-201ENST00000248668 HYPKQ9NX55 129 aa19.22■□□□□ 0.67
LRFN1-201ENST00000248668 PDIA6Q15084 440 aa19.22■□□□□ 0.67
LRFN1-201ENST00000248668 KDM6AO15550 1401 aaPredicted RBP19.22■□□□□ 0.67
LRFN1-201ENST00000248668 COPS6Q7L5N1 327 aa19.21■□□□□ 0.67
LRFN1-201ENST00000248668 DDX21Q9NR30 783 aaKnown RBP eCLIP19.21■□□□□ 0.67
LRFN1-201ENST00000248668 NCAPD2Q15021 1401 aa19.21■□□□□ 0.67
LRFN1-201ENST00000248668 IFNL2Q8IZJ0 200 aa19.21■□□□□ 0.67
LRFN1-201ENST00000248668 PI4K2BQ8TCG2 481 aa19.21■□□□□ 0.67
LRFN1-201ENST00000248668 CHAMP1Q96JM3 812 aa19.21■□□□□ 0.67
LRFN1-201ENST00000248668 BICC1Q9H694 974 aaKnown RBP19.21■□□□□ 0.67
LRFN1-201ENST00000248668 TTC5Q8N0Z6 440 aa19.21■□□□□ 0.67
LRFN1-201ENST00000248668 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.2■□□□□ 0.66
LRFN1-201ENST00000248668 MYD88Q99836 296 aa19.2■□□□□ 0.66
LRFN1-201ENST00000248668 PHRF1Q9P1Y6 1649 aaKnown RBP19.2■□□□□ 0.66
LRFN1-201ENST00000248668 GRM8O00222 908 aa19.19■□□□□ 0.66
LRFN1-201ENST00000248668 DDX58O95786 925 aaKnown RBP19.19■□□□□ 0.66
LRFN1-201ENST00000248668 CWC27Q6UX04 472 aaKnown RBP19.19■□□□□ 0.66
LRFN1-201ENST00000248668 HEG1Q9ULI3 1381 aa19.19■□□□□ 0.66
LRFN1-201ENST00000248668 IGKV5-2P06315 115 aa19.18■□□□□ 0.66
LRFN1-201ENST00000248668 LINS1Q8NG48 757 aa19.18■□□□□ 0.66
LRFN1-201ENST00000248668 PRDM11Q9NQV5 511 aa19.18■□□□□ 0.66
LRFN1-201ENST00000248668 ALDH1L1O75891 902 aa19.18■□□□□ 0.66
LRFN1-201ENST00000248668 CLASRPQ8N2M8 674 aaKnown RBP19.18■□□□□ 0.66
LRFN1-201ENST00000248668 KAZALD1Q96I82 304 aa19.18■□□□□ 0.66
LRFN1-201ENST00000248668 MCCP23508 829 aa19.18■□□□□ 0.66
LRFN1-201ENST00000248668 STRCP1A6NGW2 1772 aa19.17■□□□□ 0.66
LRFN1-201ENST00000248668 GOLGA6L3A6NEY3 463 aa19.17■□□□□ 0.66
LRFN1-201ENST00000248668 LARP6Q9BRS8 491 aaKnown RBP19.17■□□□□ 0.66
LRFN1-201ENST00000248668 ATP5J2-PTCD1G3V325 749 aa19.17■□□□□ 0.66
LRFN1-201ENST00000248668 PTCD1O75127 700 aaKnown RBP19.17■□□□□ 0.66
LRFN1-201ENST00000248668 CABP4P57796 275 aa19.17■□□□□ 0.66
LRFN1-201ENST00000248668 AACSQ86V21 672 aa19.17■□□□□ 0.66
LRFN1-201ENST00000248668 CCDC8Q9H0W5 538 aaPredicted RBP19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms