RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 SIX5Q8N196 739 aa10.86□□□□□ -0.67
CXCR4-201ENST00000241393 SNIP1Q8TAD8 396 aaKnown RBP10.86□□□□□ -0.67
CXCR4-201ENST00000241393 SEC13P55735 322 aa10.85□□□□□ -0.67
CXCR4-201ENST00000241393 KCNA1Q09470 495 aa10.85□□□□□ -0.67
CXCR4-201ENST00000241393 SWI5Q1ZZU3 235 aa10.85□□□□□ -0.67
CXCR4-201ENST00000241393 ZNF594Q96JF6 807 aaPredicted RBP10.85□□□□□ -0.67
CXCR4-201ENST00000241393 KIF14Q15058 1648 aa10.85□□□□□ -0.67
CXCR4-201ENST00000241393 ANKRD30AQ9BXX3 1397 aa10.85□□□□□ -0.67
CXCR4-201ENST00000241393 ALDH1A1P00352 501 aa10.85□□□□□ -0.67
CXCR4-201ENST00000241393 GRM5P41594 1212 aa10.85□□□□□ -0.67
CXCR4-201ENST00000241393 ERVK-9P63128 1117 aa10.85□□□□□ -0.67
CXCR4-201ENST00000241393 CCDC102BQ68D86 513 aa10.85□□□□□ -0.67
CXCR4-201ENST00000241393 CYP2U1Q7Z449 544 aa10.85□□□□□ -0.67
CXCR4-201ENST00000241393 EMID1Q96A84 441 aaPredicted RBP10.85□□□□□ -0.67
CXCR4-201ENST00000241393 PZPP20742 1482 aa10.84□□□□□ -0.67
CXCR4-201ENST00000241393 ABCC10Q5T3U5 1492 aa10.84□□□□□ -0.67
CXCR4-201ENST00000241393 ZNF644Q9H582 1327 aaPredicted RBP10.84□□□□□ -0.67
CXCR4-201ENST00000241393 TTC24A2A3L6 582 aaPredicted RBP10.84□□□□□ -0.67
CXCR4-201ENST00000241393 HSPA5P11021 654 aaKnown RBP10.84□□□□□ -0.67
CXCR4-201ENST00000241393 DPYDQ12882 1025 aa10.84□□□□□ -0.67
CXCR4-201ENST00000241393 AEBP1Q8IUX7 1158 aa10.84□□□□□ -0.67
CXCR4-201ENST00000241393 CYP4X1Q8N118 509 aa10.84□□□□□ -0.67
CXCR4-201ENST00000241393 L3MBTL2Q969R5 705 aa10.84□□□□□ -0.67
CXCR4-201ENST00000241393 HIRIP3Q9BW71 556 aaPredicted RBP10.84□□□□□ -0.67
CXCR4-201ENST00000241393 PLEKHD1A6NEE1 506 aa10.83□□□□□ -0.68
CXCR4-201ENST00000241393 ZMIZ1Q9ULJ6 1067 aa10.83□□□□□ -0.68
CXCR4-201ENST00000241393 RGS20O76081 388 aa10.82□□□□□ -0.68
CXCR4-201ENST00000241393 CLDN10P78369 228 aa10.82□□□□□ -0.68
CXCR4-201ENST00000241393 PPP1R26Q5T8A7 1209 aaPredicted RBP10.82□□□□□ -0.68
CXCR4-201ENST00000241393 TMEM164Q5U3C3 297 aa10.82□□□□□ -0.68
CXCR4-201ENST00000241393 TPCN2Q8NHX9 752 aa10.82□□□□□ -0.68
CXCR4-201ENST00000241393 ATP10BO94823 1461 aa10.82□□□□□ -0.68
CXCR4-201ENST00000241393 KIAA1107Q9UPP5 1409 aa10.82□□□□□ -0.68
CXCR4-201ENST00000241393 BACH1O14867 736 aa10.82□□□□□ -0.68
CXCR4-201ENST00000241393 ESCO1Q5FWF5 840 aa10.82□□□□□ -0.68
CXCR4-201ENST00000241393 PCDHGA11Q9Y5H2 935 aa10.82□□□□□ -0.68
CXCR4-201ENST00000241393 CNTLNQ9NXG0 1405 aa10.82□□□□□ -0.68
CXCR4-201ENST00000241393 WASHC2AQ641Q2 1341 aa10.81□□□□□ -0.68
CXCR4-201ENST00000241393 TMEM88BA6NKF7 163 aa10.81□□□□□ -0.68
CXCR4-201ENST00000241393 STK32AQ8WU08 396 aa10.81□□□□□ -0.68
CXCR4-201ENST00000241393 CYLDQ9NQC7 956 aa10.81□□□□□ -0.68
CXCR4-201ENST00000241393 ARHGEF5Q12774 1597 aa10.81□□□□□ -0.68
CXCR4-201ENST00000241393 CDC42BPAQ5VT25 1732 aa10.81□□□□□ -0.68
CXCR4-201ENST00000241393 KDM5DQ9BY66 1539 aa10.81□□□□□ -0.68
CXCR4-201ENST00000241393 SPATA31E1Q6ZUB1 1445 aa10.8□□□□□ -0.68
CXCR4-201ENST00000241393 M0R2N6 131 aa10.8□□□□□ -0.68
CXCR4-201ENST00000241393 MTMR7Q9Y216 660 aa10.8□□□□□ -0.68
CXCR4-201ENST00000241393 MBD5Q9P267 1494 aa10.8□□□□□ -0.68
CXCR4-201ENST00000241393 ANKRD50Q9ULJ7 1429 aa10.79□□□□□ -0.68
CXCR4-201ENST00000241393 NNTQ13423 1086 aa10.79□□□□□ -0.68
CXCR4-201ENST00000241393 ZNF784Q8NCA9 323 aaPredicted RBP10.79□□□□□ -0.68
CXCR4-201ENST00000241393 CLP1Q92989 425 aaKnown RBP10.79□□□□□ -0.68
CXCR4-201ENST00000241393 PKD2L1Q9P0L9 805 aa10.79□□□□□ -0.68
CXCR4-201ENST00000241393 POLR1AO95602 1720 aaPredicted RBP10.79□□□□□ -0.68
CXCR4-201ENST00000241393 CCDC7Q96M83 1385 aa10.79□□□□□ -0.68
CXCR4-201ENST00000241393 C9orf84Q5VXU9 1444 aa10.78□□□□□ -0.68
CXCR4-201ENST00000241393 ZBTB7BO15156 539 aaPredicted RBP10.78□□□□□ -0.68
CXCR4-201ENST00000241393 GNRH1P01148 92 aa10.78□□□□□ -0.68
CXCR4-201ENST00000241393 TMPRSS4Q9NRS4 437 aa10.78□□□□□ -0.68
CXCR4-201ENST00000241393 PTPRGP23470 1445 aa10.77□□□□□ -0.68
CXCR4-201ENST00000241393 SCTRP47872 440 aa10.76□□□□□ -0.69
CXCR4-201ENST00000241393 PRR20EP86478 221 aa10.76□□□□□ -0.69
CXCR4-201ENST00000241393 PRR20CP86479 221 aa10.76□□□□□ -0.69
CXCR4-201ENST00000241393 PRR20DP86480 221 aa10.76□□□□□ -0.69
CXCR4-201ENST00000241393 PRR20BP86481 221 aa10.76□□□□□ -0.69
CXCR4-201ENST00000241393 PRR20AP86496 221 aa10.76□□□□□ -0.69
CXCR4-201ENST00000241393 HINFPQ9BQA5 517 aa10.76□□□□□ -0.69
CXCR4-201ENST00000241393 ARHGEF12Q9NZN5 1544 aa10.76□□□□□ -0.69
CXCR4-201ENST00000241393 WASLO00401 505 aaPredicted RBP10.76□□□□□ -0.69
CXCR4-201ENST00000241393 NBPF8Q3BBV2 869 aa10.76□□□□□ -0.69
CXCR4-201ENST00000241393 OSBPL3Q9H4L5 887 aa10.76□□□□□ -0.69
CXCR4-201ENST00000241393 UHRF1BP1Q6BDS2 1440 aa10.75□□□□□ -0.69
CXCR4-201ENST00000241393 SHROOM2Q13796 1616 aa10.75□□□□□ -0.69
CXCR4-201ENST00000241393 KIAA1024Q9UPX6 916 aa10.75□□□□□ -0.69
CXCR4-201ENST00000241393 ARID4BQ4LE39 1312 aaPredicted RBP10.75□□□□□ -0.69
CXCR4-201ENST00000241393 GDF9O60383 454 aa10.74□□□□□ -0.69
CXCR4-201ENST00000241393 NEFLP07196 543 aa10.74□□□□□ -0.69
CXCR4-201ENST00000241393 NR3C2P08235 984 aa10.74□□□□□ -0.69
CXCR4-201ENST00000241393 TSPY4P0CV99 314 aa10.74□□□□□ -0.69
CXCR4-201ENST00000241393 TSPY10P0CW01 314 aa10.74□□□□□ -0.69
CXCR4-201ENST00000241393 ATP2B4P23634 1241 aa10.74□□□□□ -0.69
CXCR4-201ENST00000241393 GDF10P55107 478 aa10.74□□□□□ -0.69
CXCR4-201ENST00000241393 PREX2Q70Z35 1606 aa10.74□□□□□ -0.69
CXCR4-201ENST00000241393 CCDC141Q6ZP82 1450 aa10.74□□□□□ -0.69
CXCR4-201ENST00000241393 SFI1A8K8P3 1242 aa10.73□□□□□ -0.69
CXCR4-201ENST00000241393 PODXL2Q9NZ53 605 aa10.73□□□□□ -0.69
CXCR4-201ENST00000241393 LILRA1O75019 489 aa10.73□□□□□ -0.69
CXCR4-201ENST00000241393 ADH1AP07327 375 aa10.73□□□□□ -0.69
CXCR4-201ENST00000241393 MAST1Q9Y2H9 1570 aa10.72□□□□□ -0.69
CXCR4-201ENST00000241393 INHAP05111 366 aa10.72□□□□□ -0.69
CXCR4-201ENST00000241393 ARID4AP29374 1257 aaPredicted RBP10.72□□□□□ -0.69
CXCR4-201ENST00000241393 WDR4P57081 412 aaKnown RBP10.72□□□□□ -0.69
CXCR4-201ENST00000241393 ZNF358Q9NW07 568 aa10.72□□□□□ -0.69
CXCR4-201ENST00000241393 TOR4AQ9NXH8 423 aa10.72□□□□□ -0.69
CXCR4-201ENST00000241393 KIF15Q9NS87 1388 aa10.71□□□□□ -0.69
CXCR4-201ENST00000241393 RALGAPBQ86X10 1494 aa10.71□□□□□ -0.69
CXCR4-201ENST00000241393 PLEKHH2Q8IVE3 1493 aa10.71□□□□□ -0.69
CXCR4-201ENST00000241393 TNFRSF10AO00220 468 aa10.71□□□□□ -0.69
CXCR4-201ENST00000241393 DKK1O94907 266 aa10.71□□□□□ -0.69
CXCR4-201ENST00000241393 ZIC2O95409 532 aaPredicted RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms