RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 TMEM57Q8N5G2 664 aa25.49■■□□□ 1.67
SNX3-201ENST00000230085 GCC1Q96CN9 775 aa25.49■■□□□ 1.67
SNX3-201ENST00000230085 GBP4Q96PP9 640 aa25.49■■□□□ 1.67
SNX3-201ENST00000230085 NOB1Q9ULX3 412 aaKnown RBP25.49■■□□□ 1.67
SNX3-201ENST00000230085 C1orf141Q5JVX7 400 aa25.49■■□□□ 1.67
SNX3-201ENST00000230085 GAS2L2Q8NHY3 880 aa25.49■■□□□ 1.67
SNX3-201ENST00000230085 KAT6BQ8WYB5 2073 aa25.48■■□□□ 1.67
SNX3-201ENST00000230085 CHD1LQ86WJ1 897 aa25.48■■□□□ 1.67
SNX3-201ENST00000230085 AKAP4Q5JQC9 854 aa25.47■■□□□ 1.67
SNX3-201ENST00000230085 CFAP44Q96MT7 982 aa25.46■■□□□ 1.67
SNX3-201ENST00000230085 FAM196AQ6ZSG2 479 aa25.46■■□□□ 1.67
SNX3-201ENST00000230085 NKX1-1Q15270 411 aaPredicted RBP25.45■■□□□ 1.66
SNX3-201ENST00000230085 MPRIPQ6WCQ1 1025 aa25.45■■□□□ 1.66
SNX3-201ENST00000230085 PANK2Q9BZ23 570 aa25.45■■□□□ 1.66
SNX3-201ENST00000230085 KIF2CQ99661 725 aa25.44■■□□□ 1.66
SNX3-201ENST00000230085 NFE2L2Q16236 605 aa25.44■■□□□ 1.66
SNX3-201ENST00000230085 ACSBG1Q96GR2 724 aa25.44■■□□□ 1.66
SNX3-201ENST00000230085 GNAT3A8MTJ3 354 aa25.43■■□□□ 1.66
SNX3-201ENST00000230085 TNPO1Q92973 898 aaKnown RBP25.43■■□□□ 1.66
SNX3-201ENST00000230085 LGR6Q9HBX8 967 aa25.42■■□□□ 1.66
SNX3-201ENST00000230085 DCAF5Q96JK2 942 aa25.41■■□□□ 1.66
SNX3-201ENST00000230085 DLG5Q8TDM6 1919 aa25.41■■□□□ 1.66
SNX3-201ENST00000230085 MAP3K5Q99683 1374 aa25.41■■□□□ 1.66
SNX3-201ENST00000230085 KCNQ2O43526 872 aa25.41■■□□□ 1.66
SNX3-201ENST00000230085 HSP90AB1P08238 724 aaKnown RBP25.41■■□□□ 1.66
SNX3-201ENST00000230085 RIPK4P57078 832 aa25.41■■□□□ 1.66
SNX3-201ENST00000230085 BCL9O00512 1426 aa25.41■■□□□ 1.66
SNX3-201ENST00000230085 KDM6AO15550 1401 aaPredicted RBP25.4■■□□□ 1.66
SNX3-201ENST00000230085 CALD1Q05682 793 aaKnown RBP25.4■■□□□ 1.66
SNX3-201ENST00000230085 ZBTB7BO15156 539 aaPredicted RBP25.39■■□□□ 1.66
SNX3-201ENST00000230085 PTF1AQ7RTS3 328 aa25.39■■□□□ 1.66
SNX3-201ENST00000230085 SBF2Q86WG5 1849 aa25.39■■□□□ 1.65
SNX3-201ENST00000230085 ESPNB1AK53 854 aa25.39■■□□□ 1.65
SNX3-201ENST00000230085 TRIM37O94972 964 aa25.39■■□□□ 1.65
SNX3-201ENST00000230085 PRIM1P49642 420 aaKnown RBP25.39■■□□□ 1.65
SNX3-201ENST00000230085 DCTN1Q14203 1278 aa25.39■■□□□ 1.65
SNX3-201ENST00000230085 IL17REQ8NFR9 667 aa25.39■■□□□ 1.65
SNX3-201ENST00000230085 SYTL4Q96C24 671 aaPredicted RBP25.39■■□□□ 1.65
SNX3-201ENST00000230085 RNMTO43148 476 aaKnown RBP25.38■■□□□ 1.65
SNX3-201ENST00000230085 ABCC4O15439 1325 aa25.37■■□□□ 1.65
SNX3-201ENST00000230085 DOT1LQ8TEK3 1739 aa25.37■■□□□ 1.65
SNX3-201ENST00000230085 TOGARAM1Q9Y4F4 1720 aa25.37■■□□□ 1.65
SNX3-201ENST00000230085 MCM10Q7L590 875 aa25.37■■□□□ 1.65
SNX3-201ENST00000230085 K7ELQ4 463 aaPredicted RBP25.36■■□□□ 1.65
SNX3-201ENST00000230085 RTF1Q92541 710 aaKnown RBP25.36■■□□□ 1.65
SNX3-201ENST00000230085 GZF1Q9H116 711 aaPredicted RBP25.36■■□□□ 1.65
SNX3-201ENST00000230085 SPRYD3Q8NCJ5 442 aa25.36■■□□□ 1.65
SNX3-201ENST00000230085 SCN11AQ9UI33 1791 aa25.35■■□□□ 1.65
SNX3-201ENST00000230085 RRP9O43818 475 aaKnown RBP25.34■■□□□ 1.65
SNX3-201ENST00000230085 PPP1R9BQ96SB3 815 aa25.34■■□□□ 1.65
SNX3-201ENST00000230085 ERVV-2B6SEH9 535 aa25.33■■□□□ 1.65
SNX3-201ENST00000230085 HTATSF1O43719 755 aaKnown RBP25.33■■□□□ 1.65
SNX3-201ENST00000230085 LNPKQ9C0E8 428 aa25.33■■□□□ 1.65
SNX3-201ENST00000230085 MRPL50Q8N5N7 158 aaKnown RBP25.33■■□□□ 1.65
SNX3-201ENST00000230085 NFATC2IPQ8NCF5 419 aa25.33■■□□□ 1.65
SNX3-201ENST00000230085 THUMPD2Q9BTF0 503 aaKnown RBP25.33■■□□□ 1.65
SNX3-201ENST00000230085 ITGB4P16144 1822 aa25.33■■□□□ 1.65
SNX3-201ENST00000230085 BCL11BQ9C0K0 894 aaPredicted RBP25.32■■□□□ 1.64
SNX3-201ENST00000230085 CEMIPQ8WUJ3 1361 aa25.32■■□□□ 1.64
SNX3-201ENST00000230085 ADAMTS7Q9UKP4 1686 aa25.32■■□□□ 1.64
SNX3-201ENST00000230085 ZNF853P0CG23 659 aa25.31■■□□□ 1.64
SNX3-201ENST00000230085 CABP4P57796 275 aa25.31■■□□□ 1.64
SNX3-201ENST00000230085 PIGBQ92521 554 aa25.31■■□□□ 1.64
SNX3-201ENST00000230085 IFT57Q9NWB7 429 aa25.31■■□□□ 1.64
SNX3-201ENST00000230085 KLHL40Q2TBA0 621 aa25.31■■□□□ 1.64
SNX3-201ENST00000230085 SLC52A2Q9HAB3 445 aa25.31■■□□□ 1.64
SNX3-201ENST00000230085 TMOD3Q9NYL9 352 aa25.31■■□□□ 1.64
SNX3-201ENST00000230085 NHSQ6T4R5 1651 aa25.3■■□□□ 1.64
SNX3-201ENST00000230085 VAMP4O75379 141 aa25.3■■□□□ 1.64
SNX3-201ENST00000230085 CCDC173Q0VFZ6 552 aa25.3■■□□□ 1.64
SNX3-201ENST00000230085 TBC1D9Q6ZT07 1266 aa25.3■■□□□ 1.64
SNX3-201ENST00000230085 GOLGA6L22H0YM25 854 aa25.28■■□□□ 1.64
SNX3-201ENST00000230085 CDC45O75419 566 aa25.28■■□□□ 1.64
SNX3-201ENST00000230085 LMOD3Q0VAK6 560 aa25.28■■□□□ 1.64
SNX3-201ENST00000230085 GNAI1P63096 354 aa25.28■■□□□ 1.64
SNX3-201ENST00000230085 TEFQ10587 303 aa25.28■■□□□ 1.64
SNX3-201ENST00000230085 GLIPR1L2Q4G1C9 344 aa25.28■■□□□ 1.64
SNX3-201ENST00000230085 GAS2L3Q86XJ1 694 aa25.28■■□□□ 1.64
SNX3-201ENST00000230085 UPF1Q92900 1129 aaKnown RBP eCLIP25.27■■□□□ 1.64
SNX3-201ENST00000230085 RABEP1Q15276 862 aa25.26■■□□□ 1.63
SNX3-201ENST00000230085 NAP1L5Q96NT1 182 aaPredicted RBP25.26■■□□□ 1.63
SNX3-201ENST00000230085 BTAF1O14981 1849 aa25.26■■□□□ 1.63
SNX3-201ENST00000230085 ERBB4Q15303 1308 aa25.26■■□□□ 1.63
SNX3-201ENST00000230085 APBA3O96018 575 aa25.26■■□□□ 1.63
SNX3-201ENST00000230085 TPM2P07951 284 aa25.26■■□□□ 1.63
SNX3-201ENST00000230085 HS1BP3Q53T59 392 aa25.26■■□□□ 1.63
SNX3-201ENST00000230085 TERF1P54274 439 aa25.25■■□□□ 1.63
SNX3-201ENST00000230085 ZNF445P59923 1031 aa25.25■■□□□ 1.63
SNX3-201ENST00000230085 MRC1P22897 1456 aa25.25■■□□□ 1.63
SNX3-201ENST00000230085 TRIM44Q96DX7 344 aaPredicted RBP25.24■■□□□ 1.63
SNX3-201ENST00000230085 API5Q9BZZ5 524 aaKnown RBP25.24■■□□□ 1.63
SNX3-201ENST00000230085 ASAP1Q9ULH1 1129 aa25.24■■□□□ 1.63
SNX3-201ENST00000230085 TNS1Q9HBL0 1735 aaKnown RBP25.23■■□□□ 1.63
SNX3-201ENST00000230085 CYP2E1P05181 493 aaPredicted RBP25.23■■□□□ 1.63
SNX3-201ENST00000230085 HSP90AA1P07900 732 aaKnown RBP25.23■■□□□ 1.63
SNX3-201ENST00000230085 ANKRD45Q5TZF3 282 aa25.23■■□□□ 1.63
SNX3-201ENST00000230085 SIRT2Q8IXJ6 389 aa25.23■■□□□ 1.63
SNX3-201ENST00000230085 SF3B2Q13435 895 aaKnown RBP25.23■■□□□ 1.63
SNX3-201ENST00000230085 NUCB2P80303 420 aa25.22■■□□□ 1.63
SNX3-201ENST00000230085 SLC39A6Q13433 755 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms