RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 C11orf42Q8N5U0 333 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NIPA2Q8N8Q9 360 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 RTL3Q8N8U3 475 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 SYT2Q8N9I0 419 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 TDRD5Q8NAT2 981 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 SUMF1Q8NBK3 374 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CSNK1G2-AS1Q8NCQ2 148 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NUP37Q8NFH4 326 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 TSPAN14Q8NG11 270 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 OR4K1Q8NGD4 311 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 OR5T2Q8NGG2 359 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 OCC1Q8TAD7 63 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MRAPQ8TCY5 172 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ATP8B4Q8TF62 1192 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ATL1Q8WXF7 558 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SEPT1Q8WYJ6 367 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ROBO4Q8WZ75 1007 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NSMAFQ92636 917 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 PROX1Q92786 737 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CASP10Q92851 521 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NABP1Q96AH0 204 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SPSB1Q96BD6 273 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 PTERQ96BW5 349 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NTNG2Q96CW9 530 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 PGAP3Q96FM1 320 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 PDLIM5Q96HC4 596 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 RBM41Q96IZ5 413 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 SLC45A3Q96JT2 553 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ZNF597Q96LX8 424 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SFXN2Q96NB2 322 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NEDD4LQ96PU5 975 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 GCNAQ96QF7 691 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SEPHS2Q99611 448 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CDCA3Q99618 268 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 SDF4Q9BRK5 362 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CHCHD5Q9BSY4 110 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 URM1Q9BTM9 101 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 CENPOQ9BU64 300 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MAK16Q9BXY0 300 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 KLHL4Q9C0H6 718 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MTMR12Q9C0I1 747 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 NYXQ9GZU5 481 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ANKRD2Q9GZV1 360 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ZHX3Q9H4I2 956 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ACTL8Q9H568 366 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 C5orf66Q9H5L9 145 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 OPA3Q9H6K4 179 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 HEXA-AS1Q9H8Q6 139 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MTHFD2LQ9H903 347 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 LMAN1LQ9HAT1 526 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 IL1RAPQ9NPH3 570 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 GSN-AS1Q9NRJ2 163 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 IARS2Q9NSE4 1012 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 TBC1D13Q9NVG8 400 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 HAUS2Q9NVX0 235 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 CHCHD3Q9NX63 227 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 CLEC5AQ9NY25 188 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 DPP3Q9NY33 737 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 GTSE1Q9NYZ3 720 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MRPL15Q9P015 296 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 HACD3Q9P035 362 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 ZNF581Q9P0T4 197 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 WDR35Q9P2L0 1181 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MORF4L1Q9UBU8 362 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 C19orf25Q9UFG5 118 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 SLC24A2Q9UI40 661 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 FBXL4Q9UKA2 621 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 SPATA2Q9UM82 520 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MRPS18CQ9Y3D5 142 aaKnown RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 TRPV2Q9Y5S1 764 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 MAGED1Q9Y5V3 778 aaPredicted RBP0.32□□□□□ -2.36
VPS35-212ENST00000640313 LIPGQ9Y5X9 500 aa0.32□□□□□ -2.36
VPS35-212ENST00000640313 hCG_38984A0A1B0GV85 526 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 hCG_1809904A0A1W2PP81 198 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 A0A1W2PPE2 198 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 A0A1W2PR64 198 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 URADA6NGE7 173 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 NKX6-3A6NJ46 265 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ASB14A6NK59 587 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 A8MXK9 166 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 H3BMM5 538 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PANO1I0J062 215 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 E2F3O00716 465 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 HAT1O14929 419 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TFECO14948 347 aaPredicted RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 EPHB6O15197 1021 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 MAGEB2O15479 319 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 P2RX6O15547 441 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TXNL1O43396 289 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TNFSF12O43508 249 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 LATO43561 262 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 CYTIPO60759 359 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 PRAF2O60831 178 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 FCGR3BO75015 233 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 TADA2AO75478 443 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 ANGPTL1O95841 491 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 LY6G6DO95868 133 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 SERPING1P05155 500 aa0.31□□□□□ -2.36
VPS35-212ENST00000640313 RPLP0P05388 317 aaKnown RBP0.31□□□□□ -2.36
VPS35-212ENST00000640313 PROS1P07225 676 aa0.31□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms