RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 OR4Q3Q8NH05 313 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 CASP10Q92851 521 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 RIMS4Q9H426 269 aaPredicted RBP3.02□□□□□ -1.93
CD44-239ENST00000639002 CLEC5AQ9NY25 188 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 ANAPC11Q9NYG5 84 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 CHORDC1Q9UHD1 332 aaPredicted RBP3.02□□□□□ -1.93
CD44-239ENST00000639002 RPS6KA6Q9UK32 745 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 TRPV2Q9Y5S1 764 aa3.02□□□□□ -1.93
CD44-239ENST00000639002 TDRD6O60522 2096 aaKnown RBP3.01□□□□□ -1.93
CD44-239ENST00000639002 hCG_38984A0A1B0GV85 526 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 PDHXO00330 501 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 TXNL1O43396 289 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 SH3BGRLO75368 114 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 MTRF1O75570 445 aaKnown RBP3.01□□□□□ -1.93
CD44-239ENST00000639002 MC5RP33032 325 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 BTG1P62324 171 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 SRPXP78539 464 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 MLF2Q15773 248 aaPredicted RBP3.01□□□□□ -1.93
CD44-239ENST00000639002 ATAD3CQ5T2N8 411 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 NAA16Q6N069 864 aaPredicted RBP3.01□□□□□ -1.93
CD44-239ENST00000639002 PRSS55Q6UWB4 352 aaPredicted RBP3.01□□□□□ -1.93
CD44-239ENST00000639002 PARP8Q8N3A8 854 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 OR9Q2Q8NGE9 314 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 OR4C15Q8NGM1 316 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 NABP1Q96AH0 204 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 HNRNPABQ99729 332 aaKnown RBP3.01□□□□□ -1.93
CD44-239ENST00000639002 APOL6Q9BWW8 343 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 PHPT1Q9NRX4 125 aaPredicted RBP3.01□□□□□ -1.93
CD44-239ENST00000639002 NYAP2Q9P242 653 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 KLK11Q9UBX7 282 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 NAALAD2Q9Y3Q0 740 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 POGZQ7Z3K3 1410 aa3.01□□□□□ -1.93
CD44-239ENST00000639002 TRIM49BA6NDI0 452 aa3□□□□□ -1.93
CD44-239ENST00000639002 K7ENM7 598 aa3□□□□□ -1.93
CD44-239ENST00000639002 SEMA4FO95754 770 aa3□□□□□ -1.93
CD44-239ENST00000639002 KRT6AP02538 564 aa3□□□□□ -1.93
CD44-239ENST00000639002 KRT6BP04259 564 aa3□□□□□ -1.93
CD44-239ENST00000639002 FAM200BP0CF97 657 aa3□□□□□ -1.93
CD44-239ENST00000639002 NR2F1P10589 423 aa3□□□□□ -1.93
CD44-239ENST00000639002 ZNF19P17023 458 aa3□□□□□ -1.93
CD44-239ENST00000639002 ZBTB25P24278 435 aa3□□□□□ -1.93
CD44-239ENST00000639002 SFTPDP35247 375 aa3□□□□□ -1.93
CD44-239ENST00000639002 KRT6CP48668 564 aa3□□□□□ -1.93
CD44-239ENST00000639002 LYZP61626 148 aa3□□□□□ -1.93
CD44-239ENST00000639002 IFI35P80217 286 aaPredicted RBP3□□□□□ -1.93
CD44-239ENST00000639002 ACY1Q03154 408 aa3□□□□□ -1.93
CD44-239ENST00000639002 RALGDSQ12967 914 aa3□□□□□ -1.93
CD44-239ENST00000639002 Q1RN00 199 aa3□□□□□ -1.93
CD44-239ENST00000639002 SPANXN4Q5MJ08 99 aa3□□□□□ -1.93
CD44-239ENST00000639002 DMKNQ6E0U4 476 aaPredicted RBP3□□□□□ -1.93
CD44-239ENST00000639002 PLPPR4Q7Z2D5 763 aa3□□□□□ -1.93
CD44-239ENST00000639002 IQCHQ86VS3 1027 aa3□□□□□ -1.93
CD44-239ENST00000639002 HSCBQ8IWL3 235 aa3□□□□□ -1.93
CD44-239ENST00000639002 TTC30BQ8N4P2 665 aa3□□□□□ -1.93
CD44-239ENST00000639002 ITLN1Q8WWA0 313 aa3□□□□□ -1.93
CD44-239ENST00000639002 RBM41Q96IZ5 413 aaKnown RBP3□□□□□ -1.93
CD44-239ENST00000639002 CCDC68Q9H2F9 335 aa3□□□□□ -1.93
CD44-239ENST00000639002 FAM169AQ9Y6X4 670 aa3□□□□□ -1.93
CD44-239ENST00000639002 FAM168BA1KXE4 195 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 SRRM4A7MD48 611 aaKnown RBP2.99□□□□□ -1.93
CD44-239ENST00000639002 A8MVM7 634 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 TNFSF12O43508 249 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 NNMTP40261 264 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 ELK3P41970 407 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 CACNG1Q06432 222 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 FGD3Q5JSP0 725 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 HYIQ5T013 277 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 SPATA1Q5VX52 437 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 MZT2BQ6NZ67 158 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 TLK2Q86UE8 772 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 OR5M9Q8NGP3 310 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 PGM2Q96G03 612 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 LURAP1Q96LR2 239 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 PAPOLGQ9BWT3 736 aaKnown RBP2.99□□□□□ -1.93
CD44-239ENST00000639002 NSMCE4AQ9NXX6 385 aa2.99□□□□□ -1.93
CD44-239ENST00000639002 PASKQ96RG2 1323 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 SALL1Q9NSC2 1324 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 TRGV8A0A0C4DH27 118 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 IQCMA0A1B0GVH7 501 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 H3BMM5 538 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 YES1P07947 543 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 FDPSP14324 419 aaKnown RBP2.98□□□□□ -1.93
CD44-239ENST00000639002 ACHEP22303 614 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 CSE1LP55060 971 aaKnown RBP2.98□□□□□ -1.93
CD44-239ENST00000639002 RUNX3Q13761 415 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 CAPRIN1Q14444 709 aaKnown RBP2.98□□□□□ -1.93
CD44-239ENST00000639002 CRY2Q49AN0 593 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 LCE1CQ5T751 118 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 LCE1BQ5T7P3 118 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 RBPMS2Q6ZRY4 209 aaKnown RBP2.98□□□□□ -1.93
CD44-239ENST00000639002 RAPH1Q70E73 1250 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 PIGWQ7Z7B1 504 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 HIPK1Q86Z02 1210 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 DND1Q8IYX4 353 aaKnown RBP2.98□□□□□ -1.93
CD44-239ENST00000639002 SEPT1Q8WYJ6 367 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 SPSB1Q96BD6 273 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 SPATA33Q96N06 139 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 LINC00167Q96N53 147 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 ZIM3Q96PE6 472 aa2.98□□□□□ -1.93
CD44-239ENST00000639002 LRRCC1Q9C099 1032 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms