RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 OSTF1Q92882 214 aa5.95□□□□□ -1.46
SCN1A-217ENST00000637988 MSANTD3Q96H12 275 aa5.95□□□□□ -1.46
SCN1A-217ENST00000637988 MBOAT7Q96N66 472 aa5.95□□□□□ -1.46
SCN1A-217ENST00000637988 LMF2Q9BU23 707 aaKnown RBP5.95□□□□□ -1.46
SCN1A-217ENST00000637988 RETREG1Q9H6L5 497 aa5.95□□□□□ -1.46
SCN1A-217ENST00000637988 DNAJC18Q9H819 358 aa5.95□□□□□ -1.46
SCN1A-217ENST00000637988 PAK1IP1Q9NWT1 392 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-217ENST00000637988 UBR2Q8IWV8 1755 aa5.95□□□□□ -1.46
SCN1A-217ENST00000637988 KLRC4-KLRK1H3BQV0 150 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 AP2A2O94973 939 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ERVK-16P61578 105 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 RUNX3Q13761 415 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 PTPRCAPQ14761 206 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 IFI44LQ53G44 452 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 KHDC1LQ5JSQ8 128 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 LY6G5CQ5SRR4 150 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 PTCRAQ6ISU1 281 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 FAM180BQ6P0A1 224 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 C22orf39Q6P5X5 142 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 REXO1L1PQ8IX06 675 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF440Q8IYI8 595 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 DEFB123Q8N688 67 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 POU5F2Q8N7G0 328 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 L3MBTL4Q8NA19 623 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 AP1S3Q96PC3 154 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 LPAR4Q99677 370 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 PAPOLGQ9BWT3 736 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ARNT2Q9HBZ2 717 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 PRMT8Q9NR22 394 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ABCB10Q9NRK6 738 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 VNN3Q9NY84 501 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 TMEM98Q9Y2Y6 226 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 NOP16Q9Y3C1 178 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 KLK1P06870 262 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 PET100P0DJ07 73 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 COX4I1P13073 169 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 EDNRAP25101 427 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 IRF5Q13568 498 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 KCNC3Q14003 757 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 E2F2Q14209 437 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 KLHL36Q8N4N3 616 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 RNF148Q8N7C7 305 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ATXN2LQ8WWM7 1075 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 DUSP26Q9BV47 211 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 NANOGQ9H9S0 305 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SPHK2Q9NRA0 654 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 C1orf109Q9NX04 203 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SAGE1Q9NXZ1 904 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 NUP50Q9UKX7 468 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 RAB21Q9UL25 225 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 MYBPHLA2RUH7 354 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 BCKDKO14874 412 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 TGFB1P01137 390 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 HLA-EP13747 358 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 CLCQ05315 142 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 MOGQ16653 247 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 EXOC3L2Q2M3D2 409 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 CARD17Q5XLA6 110 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SERINC5Q86VE9 423 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 CLVS1Q8IUQ0 354 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SEC14L1Q92503 715 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 KCNN1Q92952 543 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 KIAA1191Q96A73 305 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 HES7Q9BYE0 225 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 TWSG1Q9GZX9 223 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 KCND3Q9UK17 655 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 PCDHB14Q9Y5E9 798 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 hCG_1818297A0A087WSY0 165 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 LYPLA2O95372 231 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ARL2P36404 184 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 OR12D2P58182 307 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 GNG2P59768 71 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 DSC1Q08554 894 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 EIF4HQ15056 248 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 UGCGQ16739 394 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 EIF5AL1Q6IS14 154 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ASPGQ86U10 573 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 CPEB3Q8NE35 698 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 B3GNT5Q9BYG0 378 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ELAC1Q9H777 363 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ZCCHC3Q9NUD5 404 aaKnown RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 KCNK6Q9Y257 313 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 MAGED1Q9Y5V3 778 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 TOPAZ1Q8N9V7 1692 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 RPS3P23396 243 aaKnown RBP eCLIP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF81P51508 661 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 CCNHP51946 323 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 POU6F2P78424 691 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 DMTNQ08495 405 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 RAB31Q13636 194 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 TNFAIP8L2Q6P589 184 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ARSKQ6UWY0 536 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 NET1Q7Z628 596 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 OR52J3Q8NH60 311 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 IGSF21Q96ID5 467 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 ULBP3Q9BZM4 244 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SH2D7A6NKC9 451 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-217ENST00000637988 INMTO95050 263 aa5.94□□□□□ -1.46
SCN1A-217ENST00000637988 SERPINA6P08185 405 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms