RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 DEFB110Q30KQ9 67 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 FAM214AQ32MH5 1076 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 CCSMST1Q4G0I0 132 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 NKAIN1Q4KMZ8 207 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 MLIPQ5VWP3 458 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 FAM219BQ5XKK7 198 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 ASB18Q6ZVZ8 466 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 MED25Q71SY5 747 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 RAB43Q86YS6 212 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 TMEM102Q8N9M5 508 aaPredicted RBP12.08□□□□□ -0.48
PNKP-217ENST00000625216 TEX19Q8NA77 164 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 FBXO15Q8NCQ5 510 aaPredicted RBP12.08□□□□□ -0.48
PNKP-217ENST00000625216 UBTD2Q8WUN7 234 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 ESAMQ96AP7 390 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 NACC2Q96BF6 587 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 THOC1Q96FV9 657 aaKnown RBP12.08□□□□□ -0.48
PNKP-217ENST00000625216 ZNF285Q96NJ3 590 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 NSUN5Q96P11 429 aaKnown RBP12.08□□□□□ -0.48
PNKP-217ENST00000625216 ERVK-6Q9BXR3 956 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 DRC3Q9H069 523 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 CLMPQ9H6B4 373 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 THAP1Q9NVV9 213 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 IFT80Q9P2H3 777 aaPredicted RBP12.08□□□□□ -0.48
PNKP-217ENST00000625216 CIDEBQ9UHD4 219 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 TP53TG5Q9Y2B4 290 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 PCDHGB7Q9Y5F8 929 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 SEC16AO15027 2179 aa12.08□□□□□ -0.48
PNKP-217ENST00000625216 ARGFXA6NJG6 315 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 MYO1CO00159 1063 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 KLF7O75840 302 aaPredicted RBP12.07□□□□□ -0.48
PNKP-217ENST00000625216 HSPA4LO95757 839 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 GUCA1CO95843 209 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 ONECUT2O95948 504 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 S100BP04271 92 aaPredicted RBP12.07□□□□□ -0.48
PNKP-217ENST00000625216 ERGP11308 486 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 TSPAN8P19075 237 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 GCGRP47871 477 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 TLE1Q04724 770 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 ARL13AQ5H913 290 aaPredicted RBP12.07□□□□□ -0.48
PNKP-217ENST00000625216 C1orf189Q5VU69 101 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 FCRL6Q6DN72 434 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 CPLX4Q7Z7G2 160 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 FAM20CQ8IXL6 584 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 ZNF781Q8N8C0 355 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 OR2L3Q8NG85 312 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 OR2A1Q8NGT9 310 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 RFWD2Q8NHY2 731 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 ZNF483Q8TF39 744 aaPredicted RBP12.07□□□□□ -0.48
PNKP-217ENST00000625216 SMPDL3AQ92484 453 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 RHBDF1Q96CC6 855 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 EGFL8Q99944 293 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 ELAC2Q9BQ52 826 aaKnown RBP12.07□□□□□ -0.48
PNKP-217ENST00000625216 SLC25A23Q9BV35 468 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 C1QTNF3Q9BXJ4 246 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 PARVBQ9HBI1 364 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 TNFRSF12AQ9NP84 129 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 DHCR7Q9UBM7 475 aaKnown RBP12.07□□□□□ -0.48
PNKP-217ENST00000625216 MARCOQ9UEW3 520 aaPredicted RBP12.07□□□□□ -0.48
PNKP-217ENST00000625216 NDOR1Q9UHB4 597 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 PTBP2Q9UKA9 531 aaKnown RBP12.07□□□□□ -0.48
PNKP-217ENST00000625216 PCTPQ9UKL6 214 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 G3BP2Q9UN86 482 aaKnown RBP12.07□□□□□ -0.48
PNKP-217ENST00000625216 KLHL20Q9Y2M5 609 aa12.07□□□□□ -0.48
PNKP-217ENST00000625216 A0A1B0GX78 115 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 A0A1W2PPV9 198 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 FITM1A5D6W6 292 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 E2F3O00716 465 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 NDUFAB1O14561 156 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 SNX3O60493 162 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 CEACAM4O75871 244 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 SUPT7LO94864 414 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 ALBP02768 609 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 CTSBP07858 339 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 ALAS2P22557 587 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 CMPK1P30085 196 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 SERPINB5P36952 375 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 HSPA7P48741 367 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 CCL11P51671 97 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 CDH13P55290 713 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 PCBP2Q15366 365 aaKnown RBP eCLIP12.06□□□□□ -0.48
PNKP-217ENST00000625216 ZXDCQ2QGD7 858 aaPredicted RBP12.06□□□□□ -0.48
PNKP-217ENST00000625216 CFAP157Q5JU67 520 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 SULT1C3Q6IMI6 304 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 MRPL14Q6P1L8 145 aaKnown RBP12.06□□□□□ -0.48
PNKP-217ENST00000625216 SPATA21Q7Z572 469 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 PIGWQ7Z7B1 504 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 HPS6Q86YV9 775 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 CRLF3Q8IUI8 442 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 TTC29Q8NA56 475 aaPredicted RBP12.06□□□□□ -0.48
PNKP-217ENST00000625216 OR2Y1Q8NGV0 311 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 C10orf82Q8WW14 230 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 FKBP10Q96AY3 582 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 FBXL8Q96CD0 374 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 CNDP1Q96KN2 507 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 FER1L6-AS2Q96M78 137 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 PKP4Q99569 1192 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 MIPEPQ99797 713 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 TRIM55Q9BYV6 548 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 SHCBP1LQ9BZQ2 653 aa12.06□□□□□ -0.48
PNKP-217ENST00000625216 ZBTB26Q9HCK0 441 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms