RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 A0A0G2JN53 185 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 C1QTNF3-AMACRE9PGA6 284 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 C6orf47O95873 294 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 AGXTP21549 392 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 KDELR2P33947 212 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 CDK3Q00526 305 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 DPTQ07507 201 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 C2orf80Q0P641 193 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 LSAMPQ13449 338 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 B3GNT6Q6ZMB0 384 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 USP51Q70EK9 711 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 GALNT13Q8IUC8 556 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 YAF2Q8IY57 180 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 FAM9CQ8IZT9 166 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 HDDC3Q8N4P3 179 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 MYADMQ96S97 322 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 MBOAT4Q96T53 435 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 ABCG4Q9H172 646 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 EPHX3Q9H6B9 360 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 XKR8Q9H6D3 395 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 BRF2Q9HAW0 419 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 CD320Q9NPF0 282 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 DMRT3Q9NQL9 472 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 FAM118AQ9NWS6 357 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 WDR37Q9Y2I8 494 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 NUP210Q8TEM1 1887 aaPredicted RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 A0A087WXM4 84 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 H7BY64 318 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 KLHL18O94889 574 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 CCNDBP1O95273 360 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 ACP5P13686 325 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 ETFAP13804 333 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 GPX2P18283 190 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 ALDH3B2P48448 385 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 TRPC1P48995 793 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 VASPP50552 380 aaPredicted RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 CLCNKAP51800 687 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 CRYBA2P53672 197 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 ERVK-21P61565 698 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 PPP2R2BQ00005 443 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 SIM2Q14190 667 aaPredicted RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 KIAA1211LQ6NV74 962 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 NXPE4Q6UWF7 544 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 SERPINA11Q86U17 422 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 ADHFE1Q8IWW8 467 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 EID3Q8N140 333 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 HM13Q8TCT9 377 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 ZFAND2BQ8WV99 257 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 HSH2DQ96JZ2 352 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 PRAP1Q96NZ9 151 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 MACROD1Q9BQ69 325 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 SGPP1Q9BX95 441 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 NAA50Q9GZZ1 169 aaKnown RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 POLR1BQ9H9Y6 1135 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 GPATCH2Q9NW75 528 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 THAP10Q9P2Z0 257 aaPredicted RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 PNMA8BQ9ULN7 279 aaPredicted RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 PADI4Q9UM07 663 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 KCNK6Q9Y257 313 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 PCDHB11Q9Y5F2 797 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 NPIPB8E9PQR5 432 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 FOXD2O60548 495 aaPredicted RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 FGL2Q14314 439 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 MPEG1Q2M385 716 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 TMEM52BQ4KMG9 183 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 SPIN4Q56A73 249 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 PRAMEF14Q5SWL7 426 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 AGBL4Q5VU57 503 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 PRAMEF13Q5VWM6 474 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 KCTD8Q6ZWB6 473 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 VN1R5Q7Z5H4 357 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 ZBTB46Q86UZ6 589 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 CYP4Z1Q86W10 505 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 IQCF2Q8IXL9 164 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 ZCCHC7Q8N3Z6 543 aaKnown RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 DNAJC5GQ8N7S2 189 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 DCUN1D5Q9BTE7 237 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 NPLQ9BXD5 320 aaPredicted RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 MKRN2Q9H000 416 aaKnown RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 NKX2-4Q9H2Z4 354 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 FAM120CQ9NX05 1096 aaKnown RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 RSL24D1Q9UHA3 163 aaKnown RBP10.2□□□□□ -0.78
CUX1-221ENST00000622516 MAP4K5Q9Y4K4 846 aa10.2□□□□□ -0.78
CUX1-221ENST00000622516 KIAA1549LQ6ZVL6 1849 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 SERTM1A2A2V5 107 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 PTGES3LE9PB15 166 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 SERPIND1P05546 499 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 EPHA2P29317 976 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 OR1E2P47887 323 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 ZNF763Q0D2J5 394 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 CAMK2GQ13555 558 aaPredicted RBP10.19□□□□□ -0.78
CUX1-221ENST00000622516 MAP7Q14244 749 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 CST6Q15828 149 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 HIST2H2ACQ16777 129 aaPredicted RBP10.19□□□□□ -0.78
CUX1-221ENST00000622516 DPY19L1Q2PZI1 675 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 CTU2Q2VPK5 515 aaKnown RBP10.19□□□□□ -0.78
CUX1-221ENST00000622516 KCTD21Q4G0X4 260 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 HIST2H2AA3Q6FI13 130 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 SYCE2Q6PIF2 218 aa10.19□□□□□ -0.78
CUX1-221ENST00000622516 TMIGD1Q6UXZ0 262 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms