RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 OR9A1PQ8NGU1 263 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 POF1BQ8WVV4 589 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 CHIAQ9BZP6 476 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 FARSBQ9NSD9 589 aaKnown RBP13.56□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF224Q9NZL3 707 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 MARK1Q9P0L2 795 aa13.56□□□□□ -0.24
CPSF1-212ENST00000616140 G3V2L1 256 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 S100A9P06702 114 aaKnown RBP13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ACSL1P33121 698 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 OR4D1Q15615 310 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF423Q2M1K9 1284 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF789Q5FWF6 425 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ATG9BQ674R7 924 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 TUBA3EQ6PEY2 450 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF613Q6PF04 617 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 SHQ1Q6PI26 577 aaKnown RBP13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF676Q8N7Q3 588 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 GRPEL2Q8TAA5 225 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 PIGUQ9H490 435 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 PFDN2Q9UHV9 154 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 PCDHB3Q9Y5E6 796 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 HEBP2Q9Y5Z4 205 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 HLA-DPB1P04440 258 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 MS4A2Q01362 244 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 MC1RQ01726 317 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ST3GAL3Q11203 375 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ST3GAL4Q11206 333 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 OGFRL1Q5TC84 451 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-212ENST00000616140 KBTBD6Q86V97 674 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 CENPSQ8N2Z9 138 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 TMED9Q9BVK6 235 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 TAPBPLQ9BX59 468 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 SEZ6LQ9BYH1 1024 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ANKHQ9HCJ1 492 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 PRODHO43272 600 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 CPNE3O75131 537 aaKnown RBP13.55□□□□□ -0.24
CPSF1-212ENST00000616140 CD72P21854 359 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ITGA3P26006 1051 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ACVR2AP27037 513 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 CD68P34810 354 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-212ENST00000616140 GBX2P52951 348 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-212ENST00000616140 TSPAN5P62079 268 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 BTN3A2P78410 334 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 GRIK2Q13002 908 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 SMCO1Q147U7 214 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 ANKDD1AQ495B1 522 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 HSDL2Q6YN16 418 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 GALNTL5Q7Z4T8 443 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 DCUN1D3Q8IWE4 304 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 DKK3Q9UBP4 350 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 PLAGL1Q9UM63 463 aa13.55□□□□□ -0.24
CPSF1-212ENST00000616140 H7BY64 318 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 TSPAN6O43657 245 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 RASAL1O95294 804 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 PPP3R1P63098 170 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 SP140Q13342 867 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 SIPA1Q96FS4 1042 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 PRAP1Q96NZ9 151 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 BHLHE41Q9C0J9 482 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-212ENST00000616140 PLEKHA1Q9HB21 404 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 LTBP3Q9NS15 1303 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 LEFTY2O00292 366 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 SORBS2O94875 1100 aaKnown RBP13.54□□□□□ -0.24
CPSF1-212ENST00000616140 PRSS56P0CW18 603 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 ALPPL2P10696 532 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF823P16415 610 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 GLDCP23378 1020 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 ACADLP28330 430 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 CD83Q01151 205 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 XKR4Q5GH76 650 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 TRIM73Q86UV7 250 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 REM2Q8IYK8 340 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-212ENST00000616140 C17orf62Q9BQA9 187 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 REEP4Q9H6H4 257 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 SLCO3A1Q9UIG8 710 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 MKLN1Q9UL63 735 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 A0A096LPI6 279 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 A0A1W2PQ72 361 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 A0A1W2PRG6 482 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 OR6C70A6NIJ9 312 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 ELOA3DA6NLF2 546 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-212ENST00000616140 RHPN2P1A8MT19 583 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 PDYNP01213 254 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 SOD2P04179 222 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 NDUFS1P28331 727 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 ETV3P41162 512 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 HTR6P50406 440 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 TEAD2Q15562 447 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 ELOA3BQ3SY89 546 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 PLEKHS1Q5SXH7 462 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 ZNF517Q6ZMY9 492 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-212ENST00000616140 GRASPQ7Z6J2 395 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-212ENST00000616140 ADGRD2Q7Z7M1 963 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 ELOA3Q8NG57 546 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 SLC30A2Q9BRI3 323 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 CDC14AQ9UNH5 594 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 GRIP1Q9Y3R0 1128 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 INSL6Q9Y581 213 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 PCDHGB7Q9Y5F8 929 aa13.54□□□□□ -0.24
CPSF1-212ENST00000616140 FKBP7Q9Y680 259 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms