RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MYBPHQ13203 477 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 SGCGQ13326 291 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 KCNAB1Q14722 419 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 PRICKLE4Q2TBC4 344 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 KRTAP27-1Q3LI81 207 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 C5orf22Q49AR2 442 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 RNASE12Q5GAN4 147 aaKnown RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 TCP11X2Q5H9J9 407 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 DEPDC1Q5TB30 811 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 PLAG1Q6DJT9 500 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 GFRALQ6UXV0 394 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 DEF8Q6ZN54 512 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 Q6ZS92 163 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 Q6ZTC4 211 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 IKBIPQ70UQ0 350 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 BCDIN3DQ7Z5W3 292 aaKnown RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 CAMKMTQ7Z624 323 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 TADA2BQ86TJ2 420 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 MFN1Q8IWA4 741 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 FAM217AQ8IXS0 508 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 SLC15A3Q8IY34 581 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 ZADH2Q8N4Q0 377 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 NAT8LQ8N9F0 302 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 ZBTB8BQ8NAP8 495 aaPredicted RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 OSR1Q8TAX0 266 aaPredicted RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 ZCCHC10Q8TBK6 192 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 ZNF653Q96CK0 615 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 RMND5BQ96G75 393 aaPredicted RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 LMLNQ96KR4 655 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 KLF6Q99612 283 aaPredicted RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 SLX1AQ9BQ83 275 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 HGH1Q9BTY7 390 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 POLDIP3Q9BY77 421 aaKnown RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 SNX25Q9H3E2 840 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 DPEP2Q9H4A9 486 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 ZDHHC6Q9H6R6 413 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 BRF2Q9HAW0 419 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 OLAHQ9NV23 265 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 PPP1R14DQ9NXH3 145 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 CAMK2AQ9UQM7 478 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 CSAG2Q9Y5P2 127 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 ATP8B3O60423 1300 aa4.19□□□□□ -1.74
LINC00540-201ENST00000611481 INTS1Q8N201 2190 aaKnown RBP4.19□□□□□ -1.74
LINC00540-201ENST00000611481 FAM90A18PA6NE21 464 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 FAM90A16PA6NEW6 464 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 TRIM64CA6NLI5 447 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 FAM90A9PA6NNJ1 464 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 FAM90A5PA8MXJ8 464 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 FOXO6A8MYZ6 492 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 C21orf140B9A014 251 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 STX16-NPEPL1H3BU86 382 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 KPNA3O00505 521 aaPredicted RBP4.18□□□□□ -1.74
LINC00540-201ENST00000611481 STX16O14662 325 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 CLIC2O15247 247 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 ZW10O43264 779 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 CCP110O43303 1012 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 B3GALNT1O75752 331 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 SLCO2B1O94956 709 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 UNC5CO95185 931 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 TOMM40O96008 361 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 VIPP01282 170 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 ALPPP05187 535 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 GRPP07492 148 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 FAM90A15PP0C7V4 464 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 FAM90A14PP0C7W9 464 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 RALAP11233 206 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 CPA1P15085 419 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 IFNAR1P17181 557 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 MST1P26927 711 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 RPA1P27694 616 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 CA5AP35218 305 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 HADHAP40939 763 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 GARSP41250 739 aaKnown RBP4.18□□□□□ -1.74
LINC00540-201ENST00000611481 ALDH3A2P51648 485 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 RAD23AP54725 363 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 SLC12A3P55017 1021 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 UCP3P55916 312 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 MAP3K7CLP57077 242 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 DEFA6Q01524 100 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 OTUD4Q01804 1114 aaKnown RBP4.18□□□□□ -1.74
LINC00540-201ENST00000611481 ID2Q02363 134 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 CCDC15Q0P6D6 951 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 KRT81Q14533 505 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 NFIL3Q16649 462 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 ALG11Q2TAA5 492 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 DEFB113Q30KQ7 82 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 BTBD16Q32M84 506 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 MMEL1Q495T6 779 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 ACCSLQ4AC99 568 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 KRTCAP3Q53RY4 240 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 BMP2KLQ5H9B9 411 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 PLEKHS1Q5SXH7 462 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 UBAP2Q5T6F2 1119 aaKnown RBP4.18□□□□□ -1.74
LINC00540-201ENST00000611481 SPECC1LQ69YQ0 1117 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 ADALQ6DHV7 355 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 TMEM71Q6P5X7 295 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 RFWD3Q6PCD5 774 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 CNSTQ6PJW8 725 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 TMEM207Q6UWW9 146 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 IGFL3Q6UXB1 125 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms