RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	TAP2	Q03519	686 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	ZNF33B	Q06732	778 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	SRSF5	Q13243	272 aa	Known RBP	11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	ELOC	Q15369	112 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	CYP2A13	Q16696	494 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	AP5B1	Q2VPB7	878 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	TIGD2	Q4W5G0	525 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	PRRT3	Q5FWE3	981 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	RABL3	Q5HYI8	236 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	PATL1	Q86TB9	770 aa	Known RBP	11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	ERI1	Q8IV48	349 aa	Known RBP	11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	ABCA7	Q8IZY2	2146 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	NSMCE2	Q96MF7	247 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	CDK15	Q96Q40	435 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	SGPP1	Q9BX95	441 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	RAB11FIP5	Q9BXF6	653 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	ACTR8	Q9H981	624 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	CCDC177	Q9NQR7	707 aa	Predicted RBP	11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	SMPD3	Q9NY59	655 aa	Predicted RBP	11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	TAAR2	Q9P1P5	351 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	KCNE2	Q9Y6J6	123 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	CEPT1	Q9Y6K0	416 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341	ANKRD12	Q6UB98	2062 aa		11.25	□□□□□ -0.61
VRK3-223	ENST00000601341		A0A1B0GTW7	788 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	OR5K4	A6NMS3	321 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	HR	O43593	1189 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	GMNN	O75496	209 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	OR6B1	O95007	311 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	KCNH1	O95259	989 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	CLDN9	O95484	217 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	EML2	O95834	649 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	HPR	P00739	348 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	RAP2A	P10114	183 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	SLC2A4	P14672	509 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	EPOR	P19235	508 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	CAPG	P40121	348 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	RAB28	P51157	221 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	HNRNPK	P61978	463 aa	Known RBP eCLIP	11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	TBPL1	P62380	186 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	ESRRG	P62508	458 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	EPS8	Q12929	822 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	KIAA0040	Q15053	153 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	NR6A1	Q15406	480 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	ZNF528	Q3MIS6	628 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	PLK5	Q496M5	336 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	GGTA1P	Q4G0N0	100 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	LRRC56	Q8IYG6	542 aa	Predicted RBP	11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	DCBLD1	Q8N8Z6	715 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	FAM47B	Q8NA70	645 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	SETD7	Q8WTS6	366 aa	Known RBP	11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	USP7	Q93009	1102 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	CXorf40B	Q96DE9	158 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	CNDP2	Q96KP4	475 aa	Known RBP	11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	IL17F	Q96PD4	163 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	LRRC61	Q9BV99	259 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	ACTL8	Q9H568	366 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	KIR3DX1	Q9H7L2	352 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	GPRC5B	Q9NZH0	403 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	ZNF624	Q9P2J8	865 aa	Predicted RBP	11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	SUSD2	Q9UGT4	822 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	RSL24D1	Q9UHA3	163 aa	Known RBP	11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	PLAGL1	Q9UM63	463 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	OAZ3	Q9UMX2	235 aa		11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	ZFC3H1	O60293	1989 aa	Known RBP	11.24	□□□□□ -0.61
VRK3-223	ENST00000601341	KIR2DS5	A0A0G2JLQ3	304 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341		A0A0G2JNG1	304 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	SERTM1	A2A2V5	107 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	KIR2DS3	K7RE56	304 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	UGDH	O60701	494 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	G6PD	P11413	515 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	NPPB	P16860	134 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	GGT1	P19440	569 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	PRPH2	P23942	346 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	AVPR2	P30518	371 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	PCDH1	Q08174	1060 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	C1orf61	Q13536	156 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	TSTA3	Q13630	321 aa	Predicted RBP	11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	KIR2DS5	Q14953	304 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	CACHD1	Q5VU97	1274 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	TTC33	Q6PID6	262 aa	Predicted RBP	11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	USP51	Q70EK9	711 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	CEP68	Q76N32	757 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	RIMKLA	Q8IXN7	391 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	DHRSX	Q8N5I4	330 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	OR52E1	Q8NGJ3	308 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	SMPDL3A	Q92484	453 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	NELL1	Q92832	810 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	OR4K3	Q96R72	315 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	MENT	Q9BUN1	341 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	UGT2B28	Q9BY64	529 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	PCBD2	Q9H0N5	130 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	RPF2	Q9H7B2	306 aa	Known RBP	11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	CAAP1	Q9H8G2	361 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	SPAST	Q9UBP0	616 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	SAC3D1	A6NKF1	404 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	CLGN	O14967	610 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	CLOCK	O15516	846 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	GPR37L1	O60883	481 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	ULK1	O75385	1050 aa		11.23	□□□□□ -0.61
VRK3-223	ENST00000601341	TRMU	O75648	421 aa	Known RBP	11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms