RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PCDHGA11Q9Y5H2 935 aa18.41■□□□□ 0.54
UPF1-209ENST00000600310 ASPMQ8IZT6 3477 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 A0A087WV48 116 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 LOC101059948A0A1B0GTJ6 334 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 ANKDD1BA6NHY2 528 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 H0YIV9 168 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 ZWINTO95229 277 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 SERPIND1P05546 499 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 SERPINB1P30740 379 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 ARL1P40616 181 aaPredicted RBP18.4■□□□□ 0.54
UPF1-209ENST00000600310 ASPHQ12797 758 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 HYAL2Q12891 473 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 MPP2Q14168 576 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 RBBP7Q16576 425 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 GGTA1PQ4G0N0 100 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 ADNP2Q6IQ32 1131 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 LCN10Q6JVE6 187 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 PRMT9Q6P2P2 845 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 SPACA3Q8IXA5 215 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 OR4F6Q8NGB9 312 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 DCBLD2Q96PD2 775 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 ZNF382Q96SR6 550 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 SH3GL2Q99962 352 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 SLC6A16Q9GZN6 736 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 DRC3Q9H069 523 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 KCNK9Q9NPC2 374 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 NDOR1Q9UHB4 597 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 CDC14AQ9UNH5 594 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 STK38LQ9Y2H1 464 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 MRPS2Q9Y399 296 aaKnown RBP18.4■□□□□ 0.54
UPF1-209ENST00000600310 SLC22A7Q9Y694 548 aa18.4■□□□□ 0.54
UPF1-209ENST00000600310 MDC1Q14676 2089 aaKnown RBP18.4■□□□□ 0.54
UPF1-209ENST00000600310 A0A1B0GTL3 188 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 TERTO14746 1132 aaKnown RBP18.39■□□□□ 0.53
UPF1-209ENST00000600310 FOXS1O43638 330 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 SASH3O75995 380 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 BPGMP07738 259 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 DHRS4L1P0CG22 281 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 ITGAXP20702 1163 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 SNRPNP63162 240 aaKnown RBP18.39■□□□□ 0.53
UPF1-209ENST00000600310 LCP2Q13094 533 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 CPSF6Q16630 551 aaKnown RBP eCLIP18.39■□□□□ 0.53
UPF1-209ENST00000600310 NKAIN1Q4KMZ8 207 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 CFAP157Q5JU67 520 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 LETMD1Q6P1Q0 360 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 FAM199XQ6PEV8 388 aaPredicted RBP18.39■□□□□ 0.53
UPF1-209ENST00000600310 LRRC69Q6ZNQ3 347 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 GPRIN3Q6ZVF9 776 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 AFAP1L2Q8N4X5 818 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 DTWD1Q8N5C7 304 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 ZNF473Q8WTR7 871 aaKnown RBP18.39■□□□□ 0.53
UPF1-209ENST00000600310 CT55Q8WUE5 264 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 REPS1Q96D71 796 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 C17orf62Q9BQA9 187 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 MECRQ9BV79 373 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 GATA5Q9BWX5 397 aaPredicted RBP18.39■□□□□ 0.53
UPF1-209ENST00000600310 SLC22A11Q9NSA0 550 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 ADGRE2Q9UHX3 823 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 ZNF225Q9UK10 706 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 CROTQ9UKG9 612 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 ZMIZ1Q9ULJ6 1067 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 APC2O95996 2303 aa18.39■□□□□ 0.53
UPF1-209ENST00000600310 LRIT2A6NDA9 550 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 URADA6NGE7 173 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 C21orf140B9A014 251 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 TBX6O95947 436 aaPredicted RBP18.38■□□□□ 0.53
UPF1-209ENST00000600310 CAPN1P07384 714 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 PIM1P11309 404 aaPredicted RBP18.38■□□□□ 0.53
UPF1-209ENST00000600310 PCNAP12004 261 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 TCN2P20062 427 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 PIK3CBP42338 1070 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 SERPINB4P48594 390 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 SLC18A1P54219 525 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 PKNOX1P55347 436 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 STXBP1P61764 594 aaKnown RBP18.38■□□□□ 0.53
UPF1-209ENST00000600310 DNASE1L3Q13609 305 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 ZRSR2Q15696 482 aaKnown RBP18.38■□□□□ 0.53
UPF1-209ENST00000600310 FAM198BQ6UWH4 519 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 FRMD7Q6ZUT3 714 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 VASH2Q86V25 355 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 HUS1BQ8NHY5 278 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 ZCCHC10Q8TBK6 192 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 WDR20Q8TBZ3 569 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 UTP15Q8TED0 518 aaKnown RBP18.38■□□□□ 0.53
UPF1-209ENST00000600310 CCT6BQ92526 530 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 KIAA1143Q96AT1 154 aaPredicted RBP18.38■□□□□ 0.53
UPF1-209ENST00000600310 ATP6V1G3Q96LB4 118 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 EFHD1Q9BUP0 239 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 FAM117AQ9C073 453 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 AICDAQ9GZX7 198 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 GPN2Q9H9Y4 310 aaPredicted RBP18.38■□□□□ 0.53
UPF1-209ENST00000600310 TRPS1Q9UHF7 1281 aa18.38■□□□□ 0.53
UPF1-209ENST00000600310 A0A0A6YYC8 382 aaPredicted RBP18.37■□□□□ 0.53
UPF1-209ENST00000600310 TMEM120BA0PK00 339 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 C9J4A7 227 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 H0YIG0 161 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 H3BQF6 201 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 I3L1I5 382 aaPredicted RBP18.37■□□□□ 0.53
UPF1-209ENST00000600310 OR4F21O95013 312 aa18.37■□□□□ 0.53
UPF1-209ENST00000600310 RAB40ALP0C0E4 278 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms