RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 IMP3Q9NV31 184 aaKnown RBP13.88□□□□□ -0.19
VRK3-217ENST00000599538 CA5BQ9Y2D0 317 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 AP3M1Q9Y2T2 418 aa13.88□□□□□ -0.19
VRK3-217ENST00000599538 DNMT3AQ9Y6K1 912 aaPredicted RBP13.88□□□□□ -0.19
VRK3-217ENST00000599538 SEC24DO94855 1032 aaPredicted RBP13.87□□□□□ -0.19
VRK3-217ENST00000599538 DNTTP04053 509 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 FURINP09958 794 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 PCSK2P16519 638 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 HPCAL1P37235 193 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 HNRNPFP52597 415 aaKnown RBP13.87□□□□□ -0.19
VRK3-217ENST00000599538 ARSFP54793 590 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 CDH15P55291 814 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 HBA1P69905 142 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 TFF2Q03403 129 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 CYP2A13Q16696 494 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 VMACQ2NL98 169 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 APLFQ8IW19 511 aaPredicted RBP13.87□□□□□ -0.19
VRK3-217ENST00000599538 MAL2Q969L2 176 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 TMEM121BQ9BXQ6 578 aaPredicted RBP13.87□□□□□ -0.19
VRK3-217ENST00000599538 BTBD1Q9H0C5 482 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 TRIT1Q9H3H1 467 aaKnown RBP13.87□□□□□ -0.19
VRK3-217ENST00000599538 REEP4Q9H6H4 257 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 GPATCH2Q9NW75 528 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 SIRT5Q9NXA8 310 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 ATP6V1HQ9UI12 483 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 BTNL2Q9UIR0 455 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 SUFUQ9UMX1 484 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 SNRNP200O75643 2136 aaKnown RBP13.87□□□□□ -0.19
VRK3-217ENST00000599538 POM121BA6NF01 834 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 H3BNH8 94 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 PLPP1O14494 284 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 H6PDO95479 791 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 ZNF682O95780 498 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 PABPC4LP0CB38 370 aaKnown RBP13.87□□□□□ -0.19
VRK3-217ENST00000599538 PRKACGP22612 351 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 MYF6P23409 242 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 PIK3CBP42338 1070 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 CLDN2P57739 230 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 C2orf80Q0P641 193 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 SPIDRQ14159 915 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 NADK2Q4G0N4 442 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 FAM71E1Q6IPT2 247 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 ZFP90Q8TF47 636 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 PYURFQ96I23 114 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 TRAPPC9Q96Q05 1148 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 PHF12Q96QT6 1004 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 F2RL3Q96RI0 385 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 HAUS8Q9BT25 410 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 ZNF717Q9BY31 904 aaPredicted RBP13.87□□□□□ -0.19
VRK3-217ENST00000599538 FAM192AQ9GZU8 254 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 CHST8Q9H2A9 424 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 PNPLA3Q9NST1 481 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 VNN3Q9NY84 501 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 FZD4Q9ULV1 537 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 VPS4AQ9UN37 437 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 GPSM3Q9Y4H4 160 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 U3KQV3 271 aa13.87□□□□□ -0.19
VRK3-217ENST00000599538 IGKV1-8A0A0C4DH67 115 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 ANHXE9PGG2 379 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 H0Y8X5 98 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 NOBOXO60393 691 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 C6orf47O95873 294 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 ALPLP05186 524 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 IL3P08700 152 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 TPP2P29144 1249 aaPredicted RBP13.86□□□□□ -0.19
VRK3-217ENST00000599538 CRYBA2P53672 197 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 VAC14Q08AM6 782 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 DMPKQ09013 629 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 ARHGAP19Q14CB8 494 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 COX20Q5RI15 118 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.86□□□□□ -0.19
VRK3-217ENST00000599538 CPZQ66K79 652 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 VTCN1Q7Z7D3 282 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 SLC9B2Q86UD5 537 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 HORMAD1Q86X24 394 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 DHRSXQ8N5I4 330 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 OR4A15Q8NGL6 344 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 MSLNLQ96KJ4 702 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 APOOQ9BUR5 198 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 MRPS26Q9BYN8 205 aaKnown RBP13.86□□□□□ -0.19
VRK3-217ENST00000599538 FGF22Q9HCT0 170 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 PRDM8Q9NQV8 689 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 DNAJB9Q9UBS3 223 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 ACSL6Q9UKU0 697 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 SLC17A4Q9Y2C5 497 aa13.86□□□□□ -0.19
VRK3-217ENST00000599538 PPM1DO15297 605 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 LCMT2O60294 686 aaKnown RBP13.85□□□□□ -0.19
VRK3-217ENST00000599538 DIRAS1O95057 198 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 CCNDBP1O95273 360 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 TEAD1P28347 426 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 CAPGP40121 348 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 PEX19P40855 299 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 RPL5P46777 297 aaKnown RBP13.85□□□□□ -0.19
VRK3-217ENST00000599538 MVDP53602 400 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 ADARB1P78563 741 aaKnown RBP13.85□□□□□ -0.19
VRK3-217ENST00000599538 PDE7AQ13946 482 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 DAG1Q14118 895 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 PLCL1Q15111 1095 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 TPRG1LQ5T0D9 272 aa13.85□□□□□ -0.19
VRK3-217ENST00000599538 MTSS1LQ765P7 747 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms