RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 LSSP48449 732 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 HSD11B2P80365 405 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 CYP4F3Q08477 520 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 UBAP2LQ14157 1087 aaKnown RBP14.57□□□□□ -0.08
TRIM28-209ENST00000597423 AASDHQ4L235 1098 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-209ENST00000597423 RNF44Q7L0R7 432 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 VN1R5Q7Z5H4 357 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 YTHDF3Q7Z739 585 aaKnown RBP14.57□□□□□ -0.08
TRIM28-209ENST00000597423 MCATQ8IVS2 390 aaKnown RBP14.57□□□□□ -0.08
TRIM28-209ENST00000597423 METTL4Q8N3J2 472 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 NT5CQ8TCD5 201 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 STARD8Q92502 1023 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 APIPQ96GX9 242 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 OR2A5Q96R48 311 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 C1orf50Q9BV19 199 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 BRINP2Q9C0B6 783 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 KLHL25Q9H0H3 589 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 TXLNGQ9NUQ3 528 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 SOHLH2Q9NX45 425 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 ZIM2Q9NZV7 527 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 ARMCX1Q9P291 453 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 GIMAP2Q9UG22 337 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 ADAM29Q9UKF5 820 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 PLCL2Q9UPR0 1127 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 GPR45Q9Y5Y3 372 aa14.57□□□□□ -0.08
TRIM28-209ENST00000597423 LY6G6EA0A0G2JKS1 128 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 H0YGG7 62 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 RPLP0P05388 317 aaKnown RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 ALDOCP09972 364 aaKnown RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 ESRRAP11474 423 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 BCKDHAP12694 445 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 DDX5P17844 614 aaKnown RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 MLLT3P42568 568 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 TSFMP43897 325 aaKnown RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 GSTM5P46439 218 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 DIO3P55073 304 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 ARF3P61204 181 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 PPP1CAP62136 330 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 CCL7P80098 99 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 TBL3Q12788 808 aaKnown RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 STX5Q13190 355 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 AGKQ53H12 422 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 TCTE1Q5JU00 501 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 GALNT18Q6P9A2 607 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 TRIM40Q6P9F5 258 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 CYP20A1Q6UW02 462 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 PRSS42Q7Z5A4 293 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 LIX1Q8N485 282 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 RNF175Q8N4F7 328 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 DNAJC22Q8N4W6 341 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 C1orf52Q8N6N3 182 aaKnown RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 GLB1L3Q8NCI6 653 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 OR4D9Q8NGE8 314 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 RP9Q8TA86 221 aaKnown RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 TSPEARQ8WU66 669 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 TM4SF19Q96DZ7 209 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 KCNC2Q96PR1 638 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 F2RL3Q96RI0 385 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 TBCDQ9BTW9 1192 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 DPY30Q9C005 99 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 ZNF385DQ9H6B1 395 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 SEMA5BQ9P283 1151 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 TAGLN3Q9UI15 199 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 U3KQA8 63 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 MN1Q10571 1320 aaPredicted RBP14.56□□□□□ -0.08
TRIM28-209ENST00000597423 PCM1Q15154 2024 aa14.56□□□□□ -0.08
TRIM28-209ENST00000597423 GNG14A0A1W2PPG7 69 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 DYTNA2CJ06 578 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 CAPN14A8MX76 684 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 CDX4O14627 284 aaPredicted RBP14.55□□□□□ -0.08
TRIM28-209ENST00000597423 PCDH7O60245 1069 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 PRMT3O60678 531 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 CTSVO60911 334 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 GUCY1B2O75343 617 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 SH3BGRLO75368 114 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 UBOX5O94941 541 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 ANXA4P09525 319 aaPredicted RBP14.55□□□□□ -0.08
TRIM28-209ENST00000597423 G6PDP11413 515 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 GPX3P22352 226 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 CALB2P22676 271 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 ACP1P24666 158 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 PIK3R1P27986 724 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 TIA1P31483 386 aaKnown RBP eCLIP14.55□□□□□ -0.08
TRIM28-209ENST00000597423 RPL3P39023 403 aaKnown RBP14.55□□□□□ -0.08
TRIM28-209ENST00000597423 CLNS1AP54105 237 aaKnown RBP14.55□□□□□ -0.08
TRIM28-209ENST00000597423 GFERP55789 205 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 SKP1P63208 163 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 CYLC2Q14093 348 aaPredicted RBP14.55□□□□□ -0.08
TRIM28-209ENST00000597423 HERC3Q15034 1050 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 TOR1AIP1Q5JTV8 583 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 PERM1Q5SV97 790 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 CCNYL2Q5T2Q4 361 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 FAM219BQ5XKK7 198 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 OR4C11Q6IEV9 310 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 ADNP2Q6IQ32 1131 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 NIPAL1Q6NVV3 410 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 ABHD13Q7L211 337 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 COMMD6Q7Z4G1 85 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 CSNK1A1LQ8N752 337 aa14.55□□□□□ -0.08
TRIM28-209ENST00000597423 OR2L5Q8NG80 312 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms