RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 MIEF2Q96C03 454 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 PDXPQ96GD0 296 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 C9orf16Q9BUW7 83 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 MS4A8Q9BY19 250 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 SEMA6AQ9H2E6 1030 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 PRDM8Q9NQV8 689 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 SLC6A13Q9NSD5 602 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 CUEDC1Q9NWM3 386 aaPredicted RBP13.6□□□□□ -0.23
LIG3-205ENST00000585941 TRNAU1APQ9NX07 287 aaKnown RBP13.6□□□□□ -0.23
LIG3-205ENST00000585941 OR6C2Q9NZP2 312 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 ZNF282Q9UDV7 671 aaPredicted RBP13.6□□□□□ -0.23
LIG3-205ENST00000585941 ADAM29Q9UKF5 820 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 NDRG2Q9UN36 371 aaKnown RBP13.6□□□□□ -0.23
LIG3-205ENST00000585941 VPS4AQ9UN37 437 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 USP22Q9UPT9 525 aa13.6□□□□□ -0.23
LIG3-205ENST00000585941 OR52A4PA6NMU1 304 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 H7BY64 318 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 CLEC3AO75596 197 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 LDLRP01130 860 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 CSNK1G2P78368 415 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 C2orf80Q0P641 193 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 LRRC32Q14392 662 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ATP6AP1Q15904 470 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 TMTC4Q5T4D3 741 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 PPP4R4Q6NUP7 873 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ZBTB49Q6ZSB9 765 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ZNF621Q6ZSS3 439 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 PHACTR4Q8IZ21 702 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 EID3Q8N140 333 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 PGBD3Q8N328 593 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 TMEM145Q8NBT3 493 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 FIG4Q92562 907 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 FAM162AQ96A26 154 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 PPCDCQ96CD2 204 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ZNF597Q96LX8 424 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 PRAP1Q96NZ9 151 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 BDH2Q9BUT1 245 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 COQ10BQ9H8M1 238 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 OLAHQ9NV23 265 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 TMEM184CQ9NVA4 438 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 SH3BP4Q9P0V3 963 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 SCOCQ9UIL1 159 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 PCDHGB4Q9UN71 923 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ICKQ9UPZ9 632 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 AP1M2Q9Y6Q5 423 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ARHGAP10A1A4S6 786 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 TXNDC9O14530 226 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 CAPN5O15484 640 aaPredicted RBP13.59□□□□□ -0.23
LIG3-205ENST00000585941 PRICKLE3O43900 615 aaPredicted RBP13.59□□□□□ -0.23
LIG3-205ENST00000585941 DEAF1O75398 565 aaPredicted RBP13.59□□□□□ -0.23
LIG3-205ENST00000585941 CPSF4O95639 269 aaKnown RBP13.59□□□□□ -0.23
LIG3-205ENST00000585941 KLK1P06870 262 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 FURINP09958 794 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ENGP17813 658 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 PSMB5P28074 263 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 CMPK1P30085 196 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 CCT8P50990 548 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ARFIP1P53367 373 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 SRP54P61011 504 aaKnown RBP13.59□□□□□ -0.23
LIG3-205ENST00000585941 PRKCQQ04759 706 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 SF1Q15637 639 aaKnown RBP13.59□□□□□ -0.23
LIG3-205ENST00000585941 TMEM35AQ53FP2 167 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 KIAA0895LQ68EN5 471 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ABI3BPQ7Z7G0 1075 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 GALNT4Q8N4A0 578 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 MARVELD2Q8N4S9 558 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 TRIML2Q8N7C3 387 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ANKRD53Q8N9V6 530 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 GOT1L1Q8NHS2 421 aaPredicted RBP13.59□□□□□ -0.23
LIG3-205ENST00000585941 WDR48Q8TAF3 677 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 FAM174AQ8TBP5 190 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 ZFPM2Q8WW38 1151 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 RGMAQ96B86 450 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 SLC22A18Q96BI1 424 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 RNF145Q96MT1 663 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 TBCDQ9BTW9 1192 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 CHID1Q9BWS9 393 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 OSBPL11Q9BXB4 747 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 MAGIXQ9H6Y5 334 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 MRPS30Q9NP92 439 aaKnown RBP13.59□□□□□ -0.23
LIG3-205ENST00000585941 TBC1D29Q9UFV1 150 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 EBF1Q9UH73 591 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 MRPS17Q9Y2R5 130 aaKnown RBP13.59□□□□□ -0.23
LIG3-205ENST00000585941 DGKBQ9Y6T7 804 aa13.59□□□□□ -0.23
LIG3-205ENST00000585941 NUP214P35658 2090 aaPredicted RBP13.58□□□□□ -0.24
LIG3-205ENST00000585941 SZT2Q5T011 3432 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 OR1F1O43749 312 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 TBX19O60806 448 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 CREG1O75629 220 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 ABCB1P08183 1280 aaPredicted RBP13.58□□□□□ -0.24
LIG3-205ENST00000585941 CD72P21854 359 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 TAS2R50P59544 299 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 SKIV2LQ15477 1246 aaKnown RBP13.58□□□□□ -0.24
LIG3-205ENST00000585941 CCNYL2Q5T2Q4 361 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 CPZQ66K79 652 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 NCLNQ969V3 563 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 AURKBQ96GD4 344 aaPredicted RBP13.58□□□□□ -0.24
LIG3-205ENST00000585941 ZNF764Q96H86 408 aaPredicted RBP13.58□□□□□ -0.24
LIG3-205ENST00000585941 SEPHS2Q99611 448 aa13.58□□□□□ -0.24
LIG3-205ENST00000585941 CIB1Q99828 191 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms