RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ANKRD34CP0C6C1 535 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 TAF6P49848 677 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 ENPP2Q13822 863 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 CDO1Q16878 200 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 ALDH1L2Q3SY69 923 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 ZNF542PQ5EBM4 170 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 DCLRE1AQ6PJP8 1040 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 LCLAT1Q6UWP7 414 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 GPR141Q7Z602 305 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 SPATA17Q96L03 361 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 ALKBH7Q9BT30 221 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 RPF1Q9H9Y2 349 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 POLKQ9UBT6 870 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 BAIAP2L1Q9UHR4 511 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 MUTYHQ9UIF7 546 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 NSG2Q9Y328 171 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 KLK4Q9Y5K2 254 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 POMT1Q9Y6A1 747 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 MYH15Q9Y2K3 1946 aa3.8□□□□□ -1.8
SMCHD1-204ENST00000581226 IGKV3D-20A0A0C4DH25 116 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 KIF5CO60282 957 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 SIX3O95343 332 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 EEF2P13639 858 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 MS4A2Q01362 244 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 SCN1BQ07699 218 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 TWISTNBQ3B726 338 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 FAM106AQ4KMX7 169 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 FAM133BQ5BKY9 247 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 FAM46CQ5VWP2 391 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 PAQR6Q6TCH4 344 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 DHRS11Q6UWP2 260 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 GDPGP1Q6ZNW5 385 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 C5orf24Q7Z6I8 188 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 C4orf19Q8IY42 314 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 DEPDC1BQ8WUY9 529 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 ANKRD9Q96BM1 317 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 ERO1AQ96HE7 468 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 IL12RB2Q99665 862 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 GPATCH1Q9BRR8 931 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 THUMPD3Q9BV44 507 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 NACAP1Q9BZK3 213 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 EXOC1Q9NV70 894 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 GMEB2Q9UKD1 530 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 NCKAP1Q9Y2A7 1128 aa3.79□□□□□ -1.8
SMCHD1-204ENST00000581226 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 GLTPD2A6NH11 291 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 ASB14A6NK59 587 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 K7EQD1 137 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 MAGEB2O15479 319 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 RLN1P04808 185 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 SP9P0CG40 484 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 THEGLP0DJG4 465 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 MYOGP15173 224 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 TIA1P31483 386 aaKnown RBP eCLIP3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 ZNF177Q13360 481 aaPredicted RBP3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 RAPSNQ13702 412 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 LY6DQ14210 128 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 SLC1A5Q15758 541 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 GLIPR1L2Q4G1C9 344 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 MPP7Q5T2T1 576 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 MACC1Q6ZN28 852 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 COX8CQ7Z4L0 72 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 GLRX5Q86SX6 157 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 ZFAND4Q86XD8 727 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 KLHL7Q8IXQ5 586 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 SIX6OS1Q8N1H7 587 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 CASP10Q92851 521 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 DNASE1L2Q92874 299 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 FAM162AQ96A26 154 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 SLC45A3Q96JT2 553 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 LGMNQ99538 433 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 CITED2Q99967 270 aaPredicted RBP3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 UBQLN3Q9H347 655 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 TMOD3Q9NYL9 352 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 NLGN3Q9NZ94 848 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 PLCL2Q9UPR0 1127 aa3.78□□□□□ -1.8
SMCHD1-204ENST00000581226 NEDD4P46934 1319 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 RNF123Q5XPI4 1314 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 IGHV3OR16-10A0A075B7F0 116 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 hCG_38984A0A1B0GV85 526 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 EPM2AB3EWF7 344 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 G3V2L1 256 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 PGRMC2O15173 223 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 TLX2O43763 284 aaPredicted RBP3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 ECE2O60344 883 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 SELENOFO60613 162 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 MT-ND2P03891 347 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 DLATP10515 647 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 AOC1P19801 751 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 SOAT1P35610 550 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 OR3A3P47888 321 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 ZNF343Q6P1L6 599 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 MEX3DQ86XN8 651 aaKnown RBP3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 CREBRFQ8IUR6 639 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 SLC22A15Q8IZD6 547 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 OR10G7Q8NGN6 311 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 RPLP0P6Q8NHW5 317 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 MIPOL1Q8TD10 442 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 LRRC15Q8TF66 581 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms