RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TMEM220Q6QAJ8 160 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 SVOPQ8N4V2 548 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 PUM2Q8TB72 1066 aaKnown RBP eCLIP21.92■■□□□ 1.1
VPS53-211ENST00000571805 TMEM184CQ9NVA4 438 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 SH3BP4Q9P0V3 963 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 GULP1Q9UBP9 304 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 ATP6V1HQ9UI12 483 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 PCDHGA6Q9Y5G7 932 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 PDE4DIPQ5VU43 2346 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 GNG14A0A1W2PPG7 69 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 TOR1BO14657 336 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 ZNF8P17098 575 aaPredicted RBP21.91■■□□□ 1.1
VPS53-211ENST00000571805 PSMB9P28065 219 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 ST13P50502 369 aaKnown RBP21.91■■□□□ 1.1
VPS53-211ENST00000571805 VBP1P61758 197 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 LSM3P62310 102 aaKnown RBP21.91■■□□□ 1.1
VPS53-211ENST00000571805 SELENOWP63302 87 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 ARHGEF6Q15052 776 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 TEAD2Q15562 447 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 ZNF658BQ4V348 819 aaPredicted RBP21.91■■□□□ 1.1
VPS53-211ENST00000571805 C11orf65Q8NCR3 313 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 OR4A15Q8NGL6 344 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 IPCEF1Q8WWN9 437 aaPredicted RBP21.91■■□□□ 1.1
VPS53-211ENST00000571805 TDP1Q9NUW8 608 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 ZNF282Q9UDV7 671 aaPredicted RBP21.91■■□□□ 1.1
VPS53-211ENST00000571805 IL36AQ9UHA7 158 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 TRIM17Q9Y577 477 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 KCNE2Q9Y6J6 123 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 PMF1-BGLAPU3KQ54 211 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 SYN1P17600 705 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 ALDH4A1P30038 563 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 DGCR6Q14129 220 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 ZNF805Q5CZA5 627 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 MED27Q6P2C8 311 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 ZNF852Q6ZMS4 543 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 GOT1L1Q8NHS2 421 aaPredicted RBP21.91■■□□□ 1.1
VPS53-211ENST00000571805 DYNC2LI1Q8TCX1 351 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 ZNF480Q8WV37 535 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 HMG20AQ9NP66 347 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 NDUFAF4Q9P032 175 aa21.91■■□□□ 1.1
VPS53-211ENST00000571805 BOLA2-SMG1P6H3BVE0 249 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 M0R3G1 203 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 TEAD4Q15561 434 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 POM121L1PQ3SYA9 428 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 COX20Q5RI15 118 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 CATSPEREQ5SY80 951 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 LIPIQ6XZB0 460 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 OTOP2Q7RTS6 562 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 NLRP8Q86W28 1048 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 ZNF557Q8N988 423 aaPredicted RBP21.9■■□□□ 1.1
VPS53-211ENST00000571805 AP2M1Q96CW1 435 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 YME1L1Q96TA2 773 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 BHLHE41Q9C0J9 482 aaPredicted RBP21.9■■□□□ 1.1
VPS53-211ENST00000571805 TMEM39AQ9NV64 488 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 RAPGEFL1Q9UHV5 662 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 LYVE1Q9Y5Y7 322 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 ADH1AP07327 375 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 MMP12P39900 470 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 BCAP31P51572 246 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 EGFLAMQ63HQ2 1017 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 TMPRSS11BQ86T26 416 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 DNASE1L2Q92874 299 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 CXorf40BQ96DE9 158 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 FOPNLQ96NB1 174 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 RUBCNLQ9H714 662 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 PCDH10Q9P2E7 1040 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 DKK3Q9UBP4 350 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 SH2B3Q9UQQ2 575 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 RNF6Q9Y252 685 aa21.9■■□□□ 1.1
VPS53-211ENST00000571805 OR2A25A4D2G3 310 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 TNFRSF21O75509 655 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 C1orf105O95561 183 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 NPPBP16860 134 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 PBLDP30039 288 aaPredicted RBP21.89■■□□□ 1.1
VPS53-211ENST00000571805 MAPK9P45984 424 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 HBA1P69905 142 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 LRRC74AQ0VAA2 488 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 GRIN2CQ14957 1233 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 Q6ZPB1 254 aaPredicted RBP21.89■■□□□ 1.1
VPS53-211ENST00000571805 OR4K1Q8NGD4 311 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 BTBD2Q9BX70 525 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 WDR12Q9GZL7 423 aaKnown RBP21.89■■□□□ 1.1
VPS53-211ENST00000571805 RNF208Q9H0X6 261 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 REEP4Q9H6H4 257 aa21.89■■□□□ 1.1
VPS53-211ENST00000571805 NADKO95544 446 aaPredicted RBP21.89■■□□□ 1.09
VPS53-211ENST00000571805 ETFAP13804 333 aa21.89■■□□□ 1.09
VPS53-211ENST00000571805 XPAP23025 273 aaPredicted RBP21.89■■□□□ 1.09
VPS53-211ENST00000571805 TGFBR2P37173 567 aa21.89■■□□□ 1.09
VPS53-211ENST00000571805 CD97P48960 835 aa21.89■■□□□ 1.09
VPS53-211ENST00000571805 DGUOKQ16854 277 aa21.89■■□□□ 1.09
VPS53-211ENST00000571805 NIPAL1Q6NVV3 410 aa21.89■■□□□ 1.09
VPS53-211ENST00000571805 AHSA2Q719I0 299 aa21.89■■□□□ 1.09
VPS53-211ENST00000571805 ARMCX6Q7L4S7 300 aa21.89■■□□□ 1.09
VPS53-211ENST00000571805 WDR34Q96EX3 536 aa21.89■■□□□ 1.09
VPS53-211ENST00000571805 KCNC2Q96PR1 638 aa21.89■■□□□ 1.09
VPS53-211ENST00000571805 ATP11BQ9Y2G3 1177 aa21.89■■□□□ 1.09
VPS53-211ENST00000571805 VIPP01282 170 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 LCKP06239 509 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 LINC00271P0C7V0 271 aa21.88■■□□□ 1.09
VPS53-211ENST00000571805 CRATP43155 626 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms