RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 BTNL2Q9UIR0 455 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 PRDM4Q9UKN5 801 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 PCDHGB4Q9UN71 923 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 DOLKQ9UPQ8 538 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 MAN2B2Q9Y2E5 1009 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 PCDHGA7Q9Y5G6 932 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 KLK4Q9Y5K2 254 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 PCYT1BQ9Y5K3 369 aaPredicted RBP7.65□□□□□ -1.18
VPS39-213ENST00000570062 PTGDR2Q9Y5Y4 395 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 AP1M2Q9Y6Q5 423 aa7.65□□□□□ -1.18
VPS39-213ENST00000570062 A0A096LPI6 279 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 PRSS51A0A1B0GVH4 220 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 GNG14A0A1W2PPG7 69 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 A0A1W2PPV9 198 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 A0A1W2PR77 199 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 AQP12BA6NM10 295 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 ISM1B1AKI9 464 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 TNFSF14O43557 240 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 PRICKLE3O43900 615 aaPredicted RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 PCDH7O60245 1069 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 DFNA5O60443 496 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 PRAMEF4O60810 478 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 BCAS2O75934 225 aaPredicted RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 PSMG1O95456 288 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 ANP32DO95626 131 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 CHRM5P08912 532 aaPredicted RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 ANXA4P09525 319 aaPredicted RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 UMPSP11172 480 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 NME1P15531 152 aaKnown RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 SDC1P18827 310 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 CD22P20273 847 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 CAPN3P20807 821 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 HTR1EP28566 365 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 HNRNPH1P31943 449 aaKnown RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 MAGEA8P43361 318 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 RNF144AP50876 292 aaPredicted RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 RPS13P62277 151 aaKnown RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 CSNK1G2P78368 415 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 ZXDAP98168 799 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 TFF2Q03403 129 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 SLC34A1Q06495 639 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 MTAPQ13126 283 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 EIF2B5Q13144 721 aaKnown RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 BIRC2Q13490 618 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 DDX39BQ13838 428 aaKnown RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 FLOT2Q14254 428 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 KPNB1Q14974 876 aaKnown RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 PLCL1Q15111 1095 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 SLC5A12Q1EHB4 618 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 CPTPQ5TA50 214 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 PRAMEF9Q5VWM5 478 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 KHDRBS2Q5VWX1 349 aaKnown RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 FBXW10Q5XX13 1052 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 SLC30A9Q6PML9 568 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 RIPOR1Q6ZS17 1223 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 FKBP9P1Q75LS8 142 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 DHDDSQ86SQ9 333 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 WDR5BQ86VZ2 330 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 NUDT13Q86X67 352 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 AQP12AQ8IXF9 295 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 RIMKLAQ8IXN7 391 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 SAMD14Q8IZD0 417 aaPredicted RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 CARFQ8N187 725 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 C7orf57Q8NEG2 295 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 OR2L3Q8NG85 312 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 OR9I1Q8NGQ6 314 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 COQ8BQ96D53 544 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 APIPQ96GX9 242 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 TMEM74Q96NL1 305 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 IL17FQ96PD4 163 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 GBP5Q96PP8 586 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 MTERF1Q99551 399 aaKnown RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 FAIM2Q9BWQ8 316 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 NLNQ9BYT8 704 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 FOXQ1Q9C009 403 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 TWSG1Q9GZX9 223 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 RAD21L1Q9H4I0 556 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 REEP4Q9H6H4 257 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 YY1AP1Q9H869 796 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 MYNNQ9NPC7 610 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 TAAR2Q9P1P5 351 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 CD300AQ9UGN4 299 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 APOBEC3BQ9UH17 382 aaKnown RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 ATP6V1HQ9UI12 483 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 ICKQ9UPZ9 632 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 GMEB1Q9Y692 573 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 CFAP20Q9Y6A4 193 aaKnown RBP7.64□□□□□ -1.19
VPS39-213ENST00000570062 CSNK1G3Q9Y6M4 447 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 CACNA1GO43497 2377 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 PLXNB3Q9ULL4 1909 aa7.64□□□□□ -1.19
VPS39-213ENST00000570062 OR52A4PA6NMU1 304 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 H0Y8X5 98 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 H7BY64 318 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 RNASET2O00584 256 aaKnown RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 RFXANKO14593 260 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 BCAT2O15382 392 aaPredicted RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 YKT6O15498 198 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 ZSCAN9O15535 394 aaPredicted RBP7.63□□□□□ -1.19
VPS39-213ENST00000570062 OR1F1O43749 312 aa7.63□□□□□ -1.19
VPS39-213ENST00000570062 ZCCHC18P0CG32 403 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms