RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-211ENST00000566550 CHRNB1P11230 501 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 MAKP20794 623 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 ACRV1P26436 265 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 STIP1P31948 543 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 FCGR2BP31994 310 aaPredicted RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 CA8P35219 290 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 RPL3P39023 403 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PTGFRP43088 359 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 SSR1P43307 286 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PEX5P50542 639 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 CCL11P51671 97 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 THOP1P52888 689 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 SUCLG1P53597 346 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 CTSCP53634 463 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 HNRNPH2P55795 449 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 ATP5IP56385 69 aaPredicted RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 SIM1P81133 766 aaPredicted RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 MAT1AQ00266 395 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 TGM3Q08188 693 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 GAGE2BQ13066 116 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 MYBPHQ13203 477 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PDK3Q15120 406 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 TRIP10Q15642 601 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 CA9Q16790 459 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 SMTNL2Q2TAL5 461 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 GAGE2EQ4V326 116 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 TMEM119Q4V9L6 283 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 GPAT3Q53EU6 434 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 AGKQ53H12 422 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 ZNF542PQ5EBM4 170 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 NKAIN2Q5VXU1 208 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 ASPHD2Q6ICH7 369 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 ZNF770Q6IQ21 691 aaPredicted RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 GAGE2AQ6NT46 116 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 KLC3Q6P597 504 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 FAM57BQ71RH2 274 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 TECPR1Q7Z6L1 1165 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 MRGPRGQ86SM5 289 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PATL1Q86TB9 770 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 SPATA2LQ8IUW3 424 aaPredicted RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 MAP7D3Q8IWC1 876 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 LGI2Q8N0V4 545 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 GCNT2Q8N0V5 402 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 UBE2J2Q8N2K1 259 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 NIPA2Q8N8Q9 360 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PROKR1Q8TCW9 393 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 UBTD2Q8WUN7 234 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 CCDC107Q8WV48 283 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PIGBQ92521 554 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 EDAQ92838 391 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 MAP4K1Q92918 833 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 MCHR2Q969V1 340 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 TSACCQ96A04 125 aaPredicted RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 OXNAD1Q96HP4 312 aaPredicted RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 DHTKD1Q96HY7 919 aaPredicted RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 APOLD1Q96LR9 279 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 LRFN5Q96NI6 719 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 TSSK2Q96PF2 358 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 USP28Q96RU2 1077 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 RAB40CQ96S21 281 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 GPA33Q99795 319 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 SH2D3AQ9BRG2 576 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 UBAC1Q9BSL1 405 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 POLR3CQ9BUI4 534 aaPredicted RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 TRAF4Q9BUZ4 470 aaPredicted RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 WWTR1Q9GZV5 400 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 WWP1Q9H0M0 922 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 THAP2Q9H0W7 228 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PNNQ9H307 717 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 KLHL31Q9H511 634 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 RNF121Q9H920 327 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 UPF2Q9HAU5 1272 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 CLK4Q9HAZ1 481 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 FANCEQ9HB96 536 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 TMEM184CQ9NVA4 438 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PARPBPQ9NWS1 579 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 VPS54Q9P1Q0 977 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 KLHL9Q9P2J3 617 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 ZMAT5Q9UDW3 170 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 MALT1Q9UDY8 824 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 GAGE2DQ9UEU5 116 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 CHTOPQ9Y3Y2 248 aaKnown RBP3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 MAB21L2Q9Y586 359 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PFASO15067 1338 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 KIF16BQ96L93 1317 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PCDH11YQ9BZA8 1340 aa3.12□□□□□ -1.91
HERPUD1-211ENST00000566550 PTCH1Q13635 1447 aa3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 CFAP43Q8NDM7 1665 aa3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 SETD1AO15047 1707 aaKnown RBP3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 KIR2DS5A0A0G2JLQ3 304 aa3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 A0A1W2PPC1 479 aa3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 CASTOR2A6NHX0 329 aa3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 C17orf105B2RV13 164 aa3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 KIR2DS3K7RE56 304 aa3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 CCL24O00175 119 aa3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 DNALI1O14645 258 aaPredicted RBP3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 OGTO15294 1046 aa3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 HSPA12AO43301 675 aa3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 SMAD6O43541 496 aaKnown RBP3.11□□□□□ -1.91
HERPUD1-211ENST00000566550 GPR137BO60478 399 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms