RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 RTN2O75298 545 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 KHDRBS3O75525 346 aaKnown RBP4.12□□□□□ -1.75
LINC00560-201ENST00000564593 VCLP18206 1134 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 MAGEB1P43366 347 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 OR3A3P47888 321 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 GNB1P62873 340 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 TEFQ10587 303 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 C9orf50Q5SZB4 431 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 ARHGAP17Q68EM7 881 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 KRTAP5-4Q6L8H1 288 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 LEKR1Q6ZMV7 388 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 PTAR1Q7Z6K3 402 aaPredicted RBP4.12□□□□□ -1.75
LINC00560-201ENST00000564593 KLHDC8BQ8IXV7 354 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 FAM76AQ8TAV0 307 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 MAGED4Q96JG8 741 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 CABS1Q96KC9 395 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 NEDD4LQ96PU5 975 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 RASL10BQ96S79 203 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 PRMT1Q99873 361 aaKnown RBP4.12□□□□□ -1.75
LINC00560-201ENST00000564593 KRTAP2-2Q9BYT5 123 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 C5orf66Q9H5L9 145 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 RNPEPL1Q9HAU8 725 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 GPR173Q9NS66 373 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 EXOC1Q9NV70 894 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 PANK4Q9NVE7 773 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 C2orf42Q9NWW7 574 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 SPG21Q9NZD8 308 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 HACD3Q9P035 362 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 FBXL4Q9UKA2 621 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 PILRBQ9UKJ0 227 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 WDR37Q9Y2I8 494 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 NOTCH4Q99466 2003 aa4.12□□□□□ -1.75
LINC00560-201ENST00000564593 TCF20Q9UGU0 1960 aaKnown RBP4.11□□□□□ -1.75
LINC00560-201ENST00000564593 A8MVM7 634 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 SLCO1B7G3V0H7 640 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 ZNF195O14628 629 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 KINO60870 393 aaKnown RBP4.11□□□□□ -1.75
LINC00560-201ENST00000564593 BAG2O95816 211 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 CEBPBP17676 345 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 CASP3P42574 277 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 LEPRP48357 1165 aaKnown RBP4.11□□□□□ -1.75
LINC00560-201ENST00000564593 KIAA1024LP59773 190 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 DCDC1P59894 354 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 SNRPD1P62314 119 aaKnown RBP4.11□□□□□ -1.75
LINC00560-201ENST00000564593 UBXN1Q04323 297 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 TMEM132DQ14C87 1099 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 PPA1Q15181 289 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 C2orf76Q3KRA6 126 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 ARMCX4Q5H9R4 360 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 DHRS11Q6UWP2 260 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 COX8CQ7Z4L0 72 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 C5orf24Q7Z6I8 188 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 HOGA1Q86XE5 327 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 TDHQ8IZJ6 230 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 DCLK2Q8N568 766 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 TCEANCQ8N8B7 351 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 DDHD1Q8NEL9 900 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 GATAD1Q8WUU5 269 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 AZIN2Q96A70 460 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 LRR1Q96L50 414 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 SLC39A8Q9C0K1 460 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 DPEP2Q9H4A9 486 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 AKIRIN1Q9H9L7 192 aaPredicted RBP4.11□□□□□ -1.75
LINC00560-201ENST00000564593 MID1IP1Q9NPA3 183 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.11□□□□□ -1.75
LINC00560-201ENST00000564593 RNF186Q9NXI6 227 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 FBXW2Q9UKT8 454 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 SYNJ1O43426 1573 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 NPHP3Q7Z494 1330 aa4.11□□□□□ -1.75
LINC00560-201ENST00000564593 PRR23AA6NEV1 266 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 H0YIG0 161 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 CYTIPO60759 359 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 AKAP3O75969 853 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 HMOX1P09601 288 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 SERPINH1P50454 418 aaKnown RBP4.1□□□□□ -1.75
LINC00560-201ENST00000564593 PAX9P55771 341 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 FKBP1BP68106 108 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 RPP38P78345 283 aaKnown RBP4.1□□□□□ -1.75
LINC00560-201ENST00000564593 SLC34A1Q06495 639 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 ACTN3Q08043 901 aaPredicted RBP4.1□□□□□ -1.75
LINC00560-201ENST00000564593 SIGLEC15Q6ZMC9 328 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 NAT8LQ8N9F0 302 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 SMYD1Q8NB12 490 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 LPCAT1Q8NF37 534 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 MRGPRDQ8TDS7 321 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 SMAP2Q8WU79 429 aaPredicted RBP4.1□□□□□ -1.75
LINC00560-201ENST00000564593 ZNRF4Q8WWF5 429 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 LGALS12Q96DT0 336 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 PDLIM5Q96HC4 596 aaKnown RBP4.1□□□□□ -1.75
LINC00560-201ENST00000564593 GMPPAQ96IJ6 420 aaPredicted RBP4.1□□□□□ -1.75
LINC00560-201ENST00000564593 DUX3Q96PT4 197 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 OSBPL8Q9BZF1 889 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 MRPL17Q9NRX2 175 aaKnown RBP4.1□□□□□ -1.75
LINC00560-201ENST00000564593 MRPS28Q9Y2Q9 187 aaKnown RBP4.1□□□□□ -1.75
LINC00560-201ENST00000564593 SELENOKQ9Y6D0 94 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 A0A087WYN8 130 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 FAM149AA5PLN7 773 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 SAP30O75446 220 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 GRAP2O75791 330 aa4.1□□□□□ -1.75
LINC00560-201ENST00000564593 MT-ND2P03891 347 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms