RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	WHRN	Q9P202	907 aa		13.31	□□□□□ -0.28
TPM1-223	ENST00000560445	CTNNAL1	Q9UBT7	734 aa		13.31	□□□□□ -0.28
TPM1-223	ENST00000560445	NAALAD2	Q9Y3Q0	740 aa		13.31	□□□□□ -0.28
TPM1-223	ENST00000560445	RELN	P78509	3460 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445		A0A1B0GUH1	482 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	FEZF1	A0PJY2	475 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	OR5H15	A6NDH6	313 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	MAGEB17	A8MXT2	336 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	MASP2	O00187	686 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	RDH16	O75452	317 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	GUCA1C	O95843	209 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	SERPIND1	P05546	499 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	ALOX12	P18054	663 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	GNAZ	P19086	355 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	SAT1	P21673	171 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	STXBP1	P61764	594 aa	Known RBP	13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	ZNF33B	Q06732	778 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	NSDHL	Q15738	373 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	BTBD16	Q32M84	506 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	C4orf17	Q53FE4	359 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	CDKL4	Q5MAI5	379 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	TRMT10B	Q6PF06	316 aa	Known RBP	13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	MBOAT1	Q6ZNC8	495 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	ANKMY2	Q8IV38	441 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	LGI4	Q8N135	537 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	SIRT6	Q8N6T7	355 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	M1AP	Q8TC57	530 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	ADAMTS18	Q8TE60	1221 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	TBC1D20	Q96BZ9	403 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	IMMP1L	Q96LU5	166 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	KRT12	Q99456	494 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	TRIM51	Q9BSJ1	452 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	RAB17	Q9H0T7	212 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	GPAM	Q9HCL2	828 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	MOCS1	Q9NZB8	636 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	PYCARD	Q9ULZ3	195 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	UTP11	Q9Y3A2	253 aa	Known RBP	13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	OARD1	Q9Y530	152 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	POLE	Q07864	2286 aa		13.3	□□□□□ -0.28
TPM1-223	ENST00000560445	ICE1	Q9Y2F5	2266 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	SGK494	L7N484	410 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	FFAR3	O14843	346 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	GPR42	O15529	346 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	GALR3	O60755	368 aa	Predicted RBP	13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	SEMA7A	O75326	666 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	S100B	P04271	92 aa	Predicted RBP	13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	FH	P07954	510 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	CASQ1	P31415	396 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	SCTR	P47872	440 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	ATP6V0D1	P61421	351 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	REEP5	Q00765	189 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	RBPJ	Q06330	500 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	RCN2	Q14257	317 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	ABRAXAS2	Q15018	415 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	SYT16	Q17RD7	645 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	MTFR2	Q6P444	385 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	SBSN	Q6UWP8	590 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	CYS1	Q717R9	158 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	MAMDC2	Q7Z304	686 aa	Predicted RBP	13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	THOC6	Q86W42	341 aa	Known RBP	13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	KRT78	Q8N1N4	520 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	AFAP1L2	Q8N4X5	818 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	KCT2	Q8NC54	265 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	PLPP5	Q8NEB5	264 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	C7orf57	Q8NEG2	295 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	PSMF1	Q92530	271 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	NEIL2	Q969S2	332 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	PYCR2	Q96C36	320 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	FAR2	Q96K12	515 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	OLFM1	Q99784	485 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	CPNE1	Q99829	537 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	SLX1A	Q9BQ83	275 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	ERP44	Q9BS26	406 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	KCNK13	Q9HB14	408 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	STMN3	Q9NZ72	180 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	PCDHGB6	Q9Y5F9	930 aa		13.29	□□□□□ -0.28
TPM1-223	ENST00000560445	PRAMEF2	O60811	474 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	SEC24D	O94855	1032 aa	Predicted RBP	13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	RASAL1	O95294	804 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	SERPINA6	P08185	405 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	RNH1	P13489	461 aa	Known RBP	13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	RPL21	P46778	160 aa	Known RBP	13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	CASP6	P55212	293 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	TGM3	Q08188	693 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	MEP1A	Q16819	746 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	PPP1R3A	Q16821	1122 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	DEFB134	Q4QY38	66 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	PAPD4	Q6PIY7	484 aa	Known RBP	13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	NXPE4	Q6UWF7	544 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	ANKRD37	Q7Z713	158 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	TMPRSS11B	Q86T26	416 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	TMEM151B	Q8IW70	566 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	FAM98A	Q8NCA5	519 aa	Known RBP	13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	ZNF740	Q8NDX6	193 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	NR4A3	Q92570	626 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	UTP23	Q9BRU9	249 aa	Known RBP	13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	DERL2	Q9GZP9	239 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	SYNPO2L	Q9H987	977 aa		13.28	□□□□□ -0.28
TPM1-223	ENST00000560445	MMP25	Q9NPA2	562 aa		13.28	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms