RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 PEX11GQ96HA9 241 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 SPOCK3Q9BQ16 436 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 MACROD1Q9BQ69 325 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 VKORC1Q9BQB6 163 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 HAUS8Q9BT25 410 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 FAM167BQ9BTA0 163 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 TRIM54Q9BYV2 358 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 TRIM8Q9BZR9 551 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 ATG10Q9H0Y0 220 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 CDCP1Q9H5V8 836 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 FBXO6Q9NRD1 293 aaPredicted RBP8.63□□□□□ -1.03
HDDC3-204ENST00000559834 C20orf96Q9NUD7 363 aaPredicted RBP8.63□□□□□ -1.03
HDDC3-204ENST00000559834 COQ3Q9NZJ6 369 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 TRMT6Q9UJA5 497 aaKnown RBP8.63□□□□□ -1.03
HDDC3-204ENST00000559834 FBXO5Q9UKT4 447 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 MED16Q9Y2X0 877 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 NAALAD2Q9Y3Q0 740 aa8.63□□□□□ -1.03
HDDC3-204ENST00000559834 SPENQ96T58 3664 aaKnown RBP8.62□□□□□ -1.03
HDDC3-204ENST00000559834 ZCWPW2A0A1B0GU75 182 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 KLRC4-KLRK1H3BQV0 150 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 LCMT2O60294 686 aaKnown RBP8.62□□□□□ -1.03
HDDC3-204ENST00000559834 RDH16O75452 317 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 CDC123O75794 336 aaPredicted RBP8.62□□□□□ -1.03
HDDC3-204ENST00000559834 HAUS5O94927 633 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 TSPAN12O95859 305 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 KRT14P02533 472 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 NPPBP16860 134 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 CDC25BP30305 580 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 VPS41P49754 854 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 CCR8P51685 355 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 SLC26A5P58743 744 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 RHAGQ02094 409 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 SP140Q13342 867 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 PWP1Q13610 501 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 PIWIL4Q7Z3Z4 852 aaKnown RBP8.62□□□□□ -1.03
HDDC3-204ENST00000559834 ZNF295-AS1Q8N0V1 137 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 MYO1HQ8N1T3 1032 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 AMER2Q8N7J2 671 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 ABHD11Q8NFV4 315 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 TRIM58Q8NG06 486 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 ELP5Q8TE02 316 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 CA5BP1Q8WTZ4 195 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 EEF1AKMT1Q8WVE0 214 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 FRMD6Q96NE9 622 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 OLFM1Q99784 485 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 AARSD1Q9BTE6 412 aaKnown RBP8.62□□□□□ -1.03
HDDC3-204ENST00000559834 HES7Q9BYE0 225 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 TSPAN10Q9H1Z9 355 aaPredicted RBP8.62□□□□□ -1.03
HDDC3-204ENST00000559834 CLK4Q9HAZ1 481 aaKnown RBP8.62□□□□□ -1.03
HDDC3-204ENST00000559834 TAS2R13Q9NYV9 303 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 PDE10AQ9Y233 779 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 MAD1L1Q9Y6D9 718 aa8.62□□□□□ -1.03
HDDC3-204ENST00000559834 URADA6NGE7 173 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 GOLGA8MH3BSY2 632 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 FCHO1O14526 889 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 FANCGO15287 622 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 CHST10O43529 356 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 OR1F1O43749 312 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 PRMT3O60678 531 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 GALR3O60755 368 aaPredicted RBP8.61□□□□□ -1.03
HDDC3-204ENST00000559834 B4GALT2O60909 372 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 SLC25A12O75746 678 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 NEURL1O76050 574 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 FHP07954 510 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 CDH1P12830 882 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 ZNF24P17028 368 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 ALOX12P18054 663 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 DEKP35659 375 aaKnown RBP8.61□□□□□ -1.03
HDDC3-204ENST00000559834 COILP38432 576 aaPredicted RBP8.61□□□□□ -1.03
HDDC3-204ENST00000559834 SLC1A2P43004 574 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 KIR3DL1P43629 444 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 SNRPNP63162 240 aaKnown RBP8.61□□□□□ -1.03
HDDC3-204ENST00000559834 RGS1Q08116 209 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 ANKRD22Q5VYY1 191 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 CRYBG3Q68DQ2 2970 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 DUPD1Q68J44 220 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 TMEM211Q6ICI0 200 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 ZNF662Q6ZS27 426 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 ABHD13Q7L211 337 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 STRA8Q7Z7C7 330 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 PDSS2Q86YH6 399 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 DOLPP1Q86YN1 238 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 SIAH3Q8IW03 269 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 CYP4X1Q8N118 509 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 GPATCH11Q8N954 259 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 POGLUT1Q8NBL1 392 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.61□□□□□ -1.03
HDDC3-204ENST00000559834 ARMC2Q8NEN0 867 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 AGAP11Q8TF27 550 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 ATL1Q8WXF7 558 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 MAGOHBQ96A72 148 aaKnown RBP8.61□□□□□ -1.03
HDDC3-204ENST00000559834 SNF8Q96H20 258 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 PTCHD1Q96NR3 888 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 SERPINB12Q96P63 405 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 NPAS2Q99743 824 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 TRIM51Q9BSJ1 452 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 SARGQ9BW04 601 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 SGPP1Q9BX95 441 aa8.61□□□□□ -1.03
HDDC3-204ENST00000559834 TRIM45Q9H8W5 580 aaPredicted RBP8.61□□□□□ -1.03
HDDC3-204ENST00000559834 LZTFL1Q9NQ48 299 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms