RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 CCDC153Q494R4 210 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 UNC50Q53HI1 259 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 TOR1AIP1Q5JTV8 583 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 ATP1A1-AS1Q5TC04 95 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 GARNL3Q5VVW2 1013 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 HIST2H2AA3Q6FI13 130 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 METTL2BQ6P1Q9 378 aaKnown RBP13.63□□□□□ -0.23
USP3-205ENST00000557884 PRMT9Q6P2P2 845 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 ZYG11AQ6WRX3 759 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 VN1R5Q7Z5H4 357 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 ARMC2Q8NEN0 867 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 OR9A4Q8NGU2 314 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 NT5CQ8TCD5 201 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 CREB3L4Q8TEY5 395 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 PPP4R1Q8TF05 950 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 ZNF483Q8TF39 744 aaPredicted RBP13.63□□□□□ -0.23
USP3-205ENST00000557884 MMABQ96EY8 250 aaPredicted RBP13.63□□□□□ -0.23
USP3-205ENST00000557884 SLC45A3Q96JT2 553 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 EFHD1Q9BUP0 239 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 YIPF2Q9BWQ6 316 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 ERVK-6Q9BXR3 956 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 KLHL31Q9H511 634 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 NT5DC2Q9H857 520 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 ZBTB26Q9HCK0 441 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 MKS1Q9NXB0 559 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 CTSFQ9UBX1 484 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 KCND3Q9UK17 655 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 FARSAQ9Y285 508 aaKnown RBP13.63□□□□□ -0.23
USP3-205ENST00000557884 RNF11Q9Y3C5 154 aa13.63□□□□□ -0.23
USP3-205ENST00000557884 ZNF860A6NHJ4 632 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 ANKDD1BA6NHY2 528 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 K7ENP7 123 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 SGK494L7N484 410 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 PPP6CO00743 305 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 CNOT3O75175 753 aaKnown RBP13.62□□□□□ -0.23
USP3-205ENST00000557884 SH3BGRLO75368 114 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 SUPT7LO94864 414 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 RAB40ALP0C0E4 278 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 ZNF888P0CJ79 500 aaPredicted RBP13.62□□□□□ -0.23
USP3-205ENST00000557884 PTPN4P29074 926 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 RAB8AP61006 207 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 MAT1AQ00266 395 aaKnown RBP13.62□□□□□ -0.23
USP3-205ENST00000557884 VAC14Q08AM6 782 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 DDX39BQ13838 428 aaKnown RBP13.62□□□□□ -0.23
USP3-205ENST00000557884 CASP8Q14790 479 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 CPSF6Q16630 551 aaKnown RBP eCLIP13.62□□□□□ -0.23
USP3-205ENST00000557884 ZNF678Q5SXM1 525 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 FAM219BQ5XKK7 198 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 GRHL2Q6ISB3 625 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 MED27Q6P2C8 311 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 INO80CQ6PI98 192 aaPredicted RBP13.62□□□□□ -0.23
USP3-205ENST00000557884 SLC22A9Q8IVM8 553 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 TMEM151BQ8IW70 566 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 RNF175Q8N4F7 328 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 CCNYL1Q8N7R7 359 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 ZSCAN1Q8NBB4 408 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 TRPV3Q8NET8 790 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 TTLQ8NG68 377 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 TRPC4APQ8TEL6 797 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 FAM111AQ96PZ2 611 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 C17orf62Q9BQA9 187 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 GPR87Q9BY21 358 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 AICDAQ9GZX7 198 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 ANKHQ9HCJ1 492 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 ZNF304Q9HCX3 659 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 SLC17A7Q9P2U7 560 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 COPG2Q9UBF2 871 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 CDC14AQ9UNH5 594 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 PLLPQ9Y342 182 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 PTRH2Q9Y3E5 179 aaKnown RBP13.62□□□□□ -0.23
USP3-205ENST00000557884 PCDHGA6Q9Y5G7 932 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 MGAQ8IWI9 3026 aa13.62□□□□□ -0.23
USP3-205ENST00000557884 A0A0G2JN53 185 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 ZNF891A8MT65 544 aaPredicted RBP13.61□□□□□ -0.23
USP3-205ENST00000557884 C4orf51C9J302 202 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 RDH16O75452 317 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 CREG1O75629 220 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 KLHL18O94889 574 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 CLDN9O95484 217 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 SERPINA6P08185 405 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 PIM1P11309 404 aaPredicted RBP13.61□□□□□ -0.23
USP3-205ENST00000557884 CPA3P15088 417 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 IMPDH1P20839 514 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 AVPR1BP47901 424 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 CLCQ05315 142 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 PCDH1Q08174 1060 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 HYAL2Q12891 473 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 TRAF3Q13114 568 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 IL10RAQ13651 578 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 DSG2Q14126 1118 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 FAM53BQ14153 422 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 ERV3-1Q14264 604 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 SYT16Q17RD7 645 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 DEFB134Q4QY38 66 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 LIPJQ5W064 366 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 SHISA6Q6ZSJ9 500 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 OVCH1Q7RTY7 1134 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 CROCCP2Q86T23 111 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 PDSS2Q86YH6 399 aa13.61□□□□□ -0.23
USP3-205ENST00000557884 LAS2Q8IYD9 372 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms