RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 PACS2Q86VP3 889 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 PARP9Q8IXQ6 854 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 ZADH2Q8N4Q0 377 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 TFGQ92734 400 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-230ENST00000557427 SLC7A6OSQ96CW6 309 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-230ENST00000557427 CCDC126Q96EE4 140 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 PTCD3Q96EY7 689 aaKnown RBP11.97□□□□□ -0.49
SHMT2-230ENST00000557427 UBXN10Q96LJ8 280 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 PPM1MQ96MI6 270 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 NDNQ99608 321 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 RAB33BQ9H082 229 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 SRMSQ9H3Y6 488 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 XKR8Q9H6D3 395 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 KIR3DX1Q9H7L2 352 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 CHST11Q9NPF2 352 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 CPSF2Q9P2I0 782 aaKnown RBP11.97□□□□□ -0.49
SHMT2-230ENST00000557427 XPR1Q9UBH6 696 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 MARCOQ9UEW3 520 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-230ENST00000557427 GSAPA4D1B5 854 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 IQCF5A8MTL0 148 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 C19orf84I3L1E1 186 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 MEN1O00255 615 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 ZNF195O14628 629 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 DLX3O60479 287 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 NPHS1O60500 1241 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 FTH1P02794 183 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 SERPINA6P08185 405 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 CAPN3P20807 821 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 CALB2P22676 271 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 ATP5F1P24539 256 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-230ENST00000557427 NDUFS1P28331 727 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 PPARGP37231 505 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-230ENST00000557427 PRKAA1Q13131 559 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 RPA4Q13156 261 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 BOP1Q14137 746 aaKnown RBP11.96□□□□□ -0.49
SHMT2-230ENST00000557427 RCN2Q14257 317 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 ZNF460Q14592 562 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 ACAP2Q15057 778 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 GPR19Q15760 415 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 ZNF658BQ4V348 819 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-230ENST00000557427 SYTL3Q4VX76 610 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 KLC3Q6P597 504 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 FAM198BQ6UWH4 519 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 MRGPRGQ86SM5 289 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 BPHLQ86WA6 291 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-230ENST00000557427 OOSP2Q86WS3 158 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 DSELQ8IZU8 1212 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 GALNT16Q8N428 558 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 ZNF501Q96CX3 271 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-230ENST00000557427 LRFN5Q96NI6 719 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 TRAPPC9Q96Q05 1148 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 SLX1AQ9BQ83 275 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 TMUB1Q9BVT8 246 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 NMUR2Q9GZQ4 415 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 GPAMQ9HCL2 828 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 ARL8BQ9NVJ2 186 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 PNPOQ9NVS9 261 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 VPS9D1Q9Y2B5 631 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-230ENST00000557427 TDRKHQ9Y2W6 561 aaKnown RBP11.96□□□□□ -0.49
SHMT2-230ENST00000557427 RAP2CQ9Y3L5 183 aa11.96□□□□□ -0.49
SHMT2-230ENST00000557427 SPTBP11277 2137 aa11.96□□□□□ -0.5
SHMT2-230ENST00000557427 SLC9B1P1A6NJY1 282 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 CAPN14A8MX76 684 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 SLCO1B7G3V0H7 640 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 QSOX1O00391 747 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 BTN3A3O00478 584 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 LIN7AO14910 233 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-230ENST00000557427 PFDN6O15212 129 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 NDUFS3O75489 264 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 KRT16P08779 473 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 GSTM1P09488 218 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 CCDC166P0CW27 439 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 CD9P21926 228 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 SSTR2P30874 369 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 HNRNPH1P31943 449 aaKnown RBP11.95□□□□□ -0.5
SHMT2-230ENST00000557427 CCR7P32248 378 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 RORAP35398 523 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 GSTM4Q03013 218 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 ACY1Q03154 408 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 HSPA14Q0VDF9 509 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 ABRQ12979 859 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 CSHL1Q14406 222 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 VWA2Q5GFL6 755 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 TMEM126BQ8IUX1 230 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 KIF2BQ8N4N8 673 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 OR52E1Q8NGJ3 308 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 OR5AR1Q8NGP9 310 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 CFAP61Q8NHU2 1237 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 NANOS1Q8WY41 292 aaKnown RBP11.95□□□□□ -0.5
SHMT2-230ENST00000557427 CCDC120Q96HB5 630 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 RILPQ96NA2 401 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 AARSD1Q9BTE6 412 aaKnown RBP11.95□□□□□ -0.5
SHMT2-230ENST00000557427 HGH1Q9BTY7 390 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 KLHL25Q9H0H3 589 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 MVB12BQ9H7P6 319 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 TRIM33Q9UPN9 1127 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 ASF1AQ9Y294 204 aa11.95□□□□□ -0.5
SHMT2-230ENST00000557427 SLC5A10A0PJK1 596 aa11.94□□□□□ -0.5
SHMT2-230ENST00000557427 TLCD2A6NGC4 264 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms