RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 SRFP11831 508 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 ACP5P13686 325 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 HNRNPA2B1P22626 353 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 PTX3P26022 381 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 GSTM5P46439 218 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 RPS3AP61247 264 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TSTA3Q13630 321 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 DDX39BQ13838 428 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 CCINQ13939 588 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TTC33Q6PID6 262 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 ABRAXAS1Q6UWZ7 409 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 KIAA1324Q6UXG2 1013 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 R3HCC1LQ7Z5L2 792 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 CAMKMTQ7Z624 323 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 FAM156AQ8NDB6 213 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TTLQ8NG68 377 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 RPLP0P6Q8NHW5 317 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D15Q8TC07 691 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 RAB2BQ8WUD1 216 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 CHTF18Q8WVB6 975 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 SNRNP27Q8WVK2 155 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 S100ZQ8WXG8 99 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 NELL1Q92832 810 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 SH3KBP1Q96B97 665 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 ERLEC1Q96DZ1 483 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 OR2M4Q96R27 311 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 PCDHAC1Q9H158 963 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 RPF2Q9H7B2 306 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 PRM3Q9NNZ6 103 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 DMRT3Q9NQL9 472 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 CCM2LQ9NUG4 571 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 ANKRD12Q6UB98 2062 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TRANK1O15050 2925 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 ZFC3H1O60293 1989 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 DHRS12A0PJE2 317 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 MAGEB17A8MXT2 336 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 H0YAE9 185 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 H3BQ06 376 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 CCNDBP1O95273 360 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 CPNE6O95741 557 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 ZNF24P17028 368 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 PPIBP23284 216 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 HRH2P25021 359 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TIA1P31483 386 aaKnown RBP eCLIP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 GRIA3P42263 894 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 RAB28P51157 221 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 DGKEP52429 567 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 DGKQP52824 942 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 KRT33BQ14525 404 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 NFATC4Q14934 902 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 INAQ16352 499 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 UAP1L1Q3KQV9 507 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TMTC4Q5T4D3 741 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 C16orf87Q6PH81 154 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TMIGD1Q6UXZ0 262 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 WASH2PQ6VEQ5 465 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TBC1D19Q8N5T2 526 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 ABHD11Q8NFV4 315 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 OR52E4Q8NGH9 312 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 FAM174AQ8TBP5 190 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 MTERF3Q96E29 417 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 C12orf66Q96MD2 445 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 WDR92Q96MX6 357 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TMEM74Q96NL1 305 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 QRFPRQ96P65 431 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TSSK3Q96PN8 268 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 WDR12Q9GZL7 423 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TTYH1Q9H313 450 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 OSGEPL1Q9H4B0 414 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 UBE2ZQ9H832 354 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 CORO2BQ9UQ03 480 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TDRKHQ9Y2W6 561 aaKnown RBP12.16□□□□□ -0.46
SHMT2-229ENST00000557348 PRKAB1Q9Y478 270 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 COLEC10Q9Y6Z7 277 aa12.16□□□□□ -0.46
SHMT2-229ENST00000557348 TCRBV21S2A2A0A5A6 115 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 PRSS38A1L453 326 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 KRT87PA6NCN2 255 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 IGLV3-19P01714 112 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 ANXA4P09525 319 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-229ENST00000557348 NDUFV2P19404 249 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 OXTRP30559 389 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 MSX2P35548 267 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-229ENST00000557348 ERFP50548 548 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 TPMTP51580 245 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 CCR8P51685 355 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 ABATP80404 500 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 CYP4F3Q08477 520 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 ZNF763Q0D2J5 394 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 SLC36A3Q495N2 470 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 RABL3Q5HYI8 236 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 DEPDC1Q5TB30 811 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 IKBIPQ70UQ0 350 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 CENPSQ8N2Z9 138 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 KRTCAP2Q8N6L1 136 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 OR2L8Q8NGY9 312 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 FERD3LQ96RJ6 166 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 ZNF347Q96SE7 839 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 NEURL2Q9BR09 285 aa12.15□□□□□ -0.46
SHMT2-229ENST00000557348 NPLQ9BXD5 320 aaPredicted RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms