RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 MRGPREQ86SM8 312 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 LCA5Q86VQ0 697 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 PLD6Q8N2A8 252 aaKnown RBP11.85□□□□□ -0.51
SLIRP-209ENST00000557342 AMER3Q8N944 861 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 OR9A4Q8NGU2 314 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 ZCCHC10Q8TBK6 192 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 WDR34Q96EX3 536 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 MACROD1Q9BQ69 325 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 CRB3Q9BUF7 120 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 TGIF2Q9GZN2 237 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 ING2Q9H160 280 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 SLC25A18Q9H1K4 315 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 CPSF2Q9P2I0 782 aaKnown RBP11.85□□□□□ -0.51
SLIRP-209ENST00000557342 G3BP2Q9UN86 482 aaKnown RBP11.85□□□□□ -0.51
SLIRP-209ENST00000557342 MRPS2Q9Y399 296 aaKnown RBP11.85□□□□□ -0.51
SLIRP-209ENST00000557342 ANGPTL3Q9Y5C1 460 aa11.85□□□□□ -0.51
SLIRP-209ENST00000557342 CACNA1GO43497 2377 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 MED13Q9UHV7 2174 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 ANKDD1BA6NHY2 528 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 AGPSO00116 658 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 SMIM24O75264 130 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 EPB42P16452 691 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 ALOX12P18054 663 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 IL1RNP18510 177 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 PIK3CGP48736 1102 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 AGTR2P50052 363 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 STXBP1P61764 594 aaKnown RBP11.84□□□□□ -0.51
SLIRP-209ENST00000557342 KLC1Q07866 573 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 C19orf57Q0VDD7 668 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 CHIT1Q13231 466 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 DOC2AQ14183 400 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 PCBP2Q15366 365 aaKnown RBP eCLIP11.84□□□□□ -0.51
SLIRP-209ENST00000557342 RBBP7Q16576 425 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 VWA2Q5GFL6 755 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 PPP1R32Q7Z5V6 425 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 AFAP1L2Q8N4X5 818 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 ANKRD53Q8N9V6 530 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 CLEC1AQ8NC01 280 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 C9orf43Q8TAL5 461 aaPredicted RBP11.84□□□□□ -0.51
SLIRP-209ENST00000557342 ACMSDQ8TDX5 336 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 UBE2E3Q969T4 207 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 MOCOSQ96EN8 888 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 MRPL57Q9BQC6 102 aaKnown RBP11.84□□□□□ -0.51
SLIRP-209ENST00000557342 SEMA4CQ9C0C4 833 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 SLC6A16Q9GZN6 736 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 CLK4Q9HAZ1 481 aaKnown RBP11.84□□□□□ -0.51
SLIRP-209ENST00000557342 P4HTMQ9NXG6 502 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 XPR1Q9UBH6 696 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 C3orf18Q9UK00 162 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 NAALAD2Q9Y3Q0 740 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 MGAQ8IWI9 3026 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 SCN2AQ99250 2005 aa11.84□□□□□ -0.51
SLIRP-209ENST00000557342 NBEAQ8NFP9 2946 aa11.83□□□□□ -0.51
SLIRP-209ENST00000557342 PCSK5Q92824 1860 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 STX16-NPEPL1H3BU86 382 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 SGK494L7N484 410 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 STX16O14662 325 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 KLHL41O60662 606 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 CLEC3AO75596 197 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 KLHL18O94889 574 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 HEXBP07686 556 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 CYC1P08574 325 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 IL10P22301 178 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 CASP2P42575 452 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 CCL11P51671 97 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 EMP2P54851 167 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 VSNL1P62760 191 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 MAT1AQ00266 395 aaKnown RBP11.83□□□□□ -0.52
SLIRP-209ENST00000557342 PCDH1Q08174 1060 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 E2F2Q14209 437 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 CPZQ66K79 652 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 WDR93Q6P2C0 686 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 SHISA6Q6ZSJ9 500 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.83□□□□□ -0.52
SLIRP-209ENST00000557342 TEX9Q8N6V9 391 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 OR51Q1Q8NH59 317 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 UTP15Q8TED0 518 aaKnown RBP11.83□□□□□ -0.52
SLIRP-209ENST00000557342 CREB3L4Q8TEY5 395 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 CCT6BQ92526 530 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 ABHD17AQ96GS6 310 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 TRIM55Q9BYV6 548 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 MRPL46Q9H2W6 279 aaKnown RBP11.83□□□□□ -0.52
SLIRP-209ENST00000557342 ZNF358Q9NW07 568 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 ASB1Q9Y576 335 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 PCDHGA9Q9Y5G4 932 aaKnown RBP11.83□□□□□ -0.52
SLIRP-209ENST00000557342 HS3ST3B1Q9Y662 390 aa11.83□□□□□ -0.52
SLIRP-209ENST00000557342 TNRC6AQ8NDV7 1962 aaKnown RBP11.83□□□□□ -0.52
SLIRP-209ENST00000557342 A0A088AWK7 358 aa11.82□□□□□ -0.52
SLIRP-209ENST00000557342 IDSB3KWA1 339 aa11.82□□□□□ -0.52
SLIRP-209ENST00000557342 UGDHO60701 494 aa11.82□□□□□ -0.52
SLIRP-209ENST00000557342 GALR3O60755 368 aaPredicted RBP11.82□□□□□ -0.52
SLIRP-209ENST00000557342 PRAMEF4O60810 478 aa11.82□□□□□ -0.52
SLIRP-209ENST00000557342 RDH16O75452 317 aa11.82□□□□□ -0.52
SLIRP-209ENST00000557342 WFS1O76024 890 aa11.82□□□□□ -0.52
SLIRP-209ENST00000557342 BMP10O95393 424 aa11.82□□□□□ -0.52
SLIRP-209ENST00000557342 PRB1P04280 392 aa11.82□□□□□ -0.52
SLIRP-209ENST00000557342 GSTA1P08263 222 aa11.82□□□□□ -0.52
SLIRP-209ENST00000557342 ZNF888P0CJ79 500 aaPredicted RBP11.82□□□□□ -0.52
SLIRP-209ENST00000557342 EPORP19235 508 aa11.82□□□□□ -0.52
SLIRP-209ENST00000557342 TAC1P20366 129 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms